{
  "id": "cio",
  "acronym": "CIO",
  "name": "Confidence Information Ontology",
  "category": "metadata",
  "domains": [
    "life"
  ],
  "kind": "ontology",
  "description": "An ontology to capture confidence information about annotations.",
  "formats": [
    "OWL",
    "OBO"
  ],
  "license": "CC0 1.0",
  "homepage": "https://github.com/BgeeDB/confidence-information-ontology",
  "repository": "https://github.com/BgeeDB/confidence-information-ontology",
  "download": "http://purl.obolibrary.org/obo/cio.owl",
  "ols": "cio",
  "obo": "cio",
  "bioportal": "CIO",
  "bioregistry": "cio",
  "publications": [
    {
      "title": "The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations",
      "doi": "10.1093/database/bav043",
      "year": 2015
    }
  ],
  "usedBy": [],
  "tags": [
    "annotation",
    "biology",
    "obo",
    "ontology"
  ],
  "url": "https://schemascope.org/o/cio/",
  "evaluation": {
    "links": {
      "homepage": {
        "url": "https://github.com/BgeeDB/confidence-information-ontology",
        "code": 200,
        "state": "ok",
        "checkedAt": "2026-10-26T02:43:32.547Z"
      },
      "repository": {
        "url": "https://github.com/BgeeDB/confidence-information-ontology",
        "code": 200,
        "state": "ok",
        "checkedAt": "2026-10-26T02:43:32.547Z"
      },
      "download": {
        "url": "http://purl.obolibrary.org/obo/cio.owl",
        "code": 200,
        "state": "ok",
        "resolvedUrl": "https://raw.githubusercontent.com/BgeeDB/confidence-information-ontology/master/src/ontology/cio.owl",
        "checkedAt": "2026-10-26T02:43:32.351Z"
      }
    },
    "github": {
      "slug": "BgeeDB/confidence-information-ontology",
      "stars": 5,
      "forks": 2,
      "openIssues": 0,
      "pushedAt": "2025-02-03T13:50:15Z",
      "archived": false,
      "license": "CC0-1.0",
      "source": "https://api.github.com/repos/BgeeDB/confidence-information-ontology",
      "fetchedAt": "2026-10-26T02:43:32.753Z"
    },
    "ols": {
      "portal": "OLS (EMBL-EBI)",
      "id": "cio",
      "api": "v2",
      "title": "Confidence Information Ontology",
      "iri": "http://purl.obolibrary.org/obo/cio.owl",
      "versionIri": "http://purl.obolibrary.org/obo/cio/releases/2015-03-10/cio.owl",
      "version": "2015-03-10",
      "releaseDate": "2015-03-10",
      "terms": 44,
      "properties": 17,
      "individuals": 0,
      "importsFrom": [
        "iao",
        "oio",
        "rdfs"
      ],
      "exportsTo": [
        "valuesets"
      ],
      "languages": [
        "en"
      ],
      "loaded": "2026-10-25T00:08:08.991187655",
      "sourceFileTimestamp": "Sun Oct 25 00:08:07 UTC 2026",
      "obsolete": false,
      "status": "LOADED",
      "page": "https://www.ebi.ac.uk/ols4/ontologies/cio",
      "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/cio",
      "fetchedAt": "2026-10-26T02:43:32.296Z"
    },
    "obo": {
      "id": "cio",
      "status": "active",
      "domain": "information",
      "license": "CC0 1.0",
      "usages": [],
      "source": "https://obofoundry.org/registry/ontologies.jsonld",
      "fetchedAt": "2026-10-26T02:37:39.556Z"
    },
    "bioportal": null,
    "citations": [
      {
        "doi": "10.1093/database/bav043",
        "count": 37,
        "source": "https://api.crossref.org/works/10.1093%2Fdatabase%2Fbav043",
        "fetchedAt": "2026-10-26T02:43:32.254Z"
      }
    ],
    "git": {
      "commit": "d2ae564a6dd3b82c7939b0cf9e0bf45a49e91aa3",
      "ref": "master",
      "headTag": null,
      "latestTag": null,
      "tagCount": 0,
      "tagDates": [],
      "url": "https://github.com/BgeeDB/confidence-information-ontology/tree/d2ae564a6dd3b82c7939b0cf9e0bf45a49e91aa3",
      "source": "https://github.com/BgeeDB/confidence-information-ontology.git/info/refs?service=git-upload-pack",
      "fetchedAt": "2026-10-26T02:43:32.297Z"
    },
    "tib": null,
    "dashboard": {
      "ns": "cio",
      "checks": {
        "FP01 Open": "ERROR",
        "FP02 Common Format": "PASS",
        "FP03 URIs": "PASS",
        "FP04 Versioning": "ERROR",
        "FP05 Scope": "PASS",
        "FP06 Textual Definitions": "PASS",
        "FP07 Relations": "PASS",
        "FP08 Documented": "PASS",
        "FP09 Plurality of Users": "ERROR",
        "FP11 Locus of Authority": "PASS",
        "FP12 Naming Conventions": "PASS",
        "FP16 Maintenance": "WARN",
        "FP20 Responsiveness": "PASS",
        "ROBOT Report": "ERROR"
      },
      "robot": {
        "ERROR": 3,
        "INFO": 1,
        "WARN": 1
      },
      "consistent": true,
      "unsatisfiable": 0,
      "classes": 44,
      "axioms": 352,
      "owl2dl": false,
      "reusedPct": 25.42,
      "usedBy": [],
      "oboScore": null,
      "summary": "ERROR",
      "checkedVersion": "http://purl.obolibrary.org/obo/cio/releases/2015-03-10/cio.owl",
      "checkedAt": "2025-12-09T20:24:29.791Z",
      "page": "https://dashboard.obofoundry.org/dashboard/cio/dashboard.html",
      "source": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json",
      "fetchedAt": "2026-10-26T02:37:39.856Z"
    },
    "quality": null,
    "oops": null,
    "releases": {
      "dates": [
        "2015-03-10"
      ],
      "lastYear": 0,
      "from": "OLS version IRI"
    },
    "bioregistry": {
      "prefix": "cio",
      "name": "Confidence Information Ontology",
      "mappings": {
        "aberowl": "CIO",
        "biocontext": "CIO",
        "bioportal": "CIO",
        "fairsharing": "FAIRsharing.e3t0yw",
        "obofoundry": "cio",
        "ols": "cio",
        "ontobee": "CIO",
        "wikidata.entity": "Q81661853"
      },
      "dependsOn": [],
      "appearsIn": [],
      "license": "CC0-1.0",
      "version": "2015-03-10",
      "deprecated": false,
      "page": "https://bioregistry.io/cio",
      "source": "https://bioregistry.io/api/registry/cio",
      "fetchedAt": "2026-10-26T02:43:32.198Z"
    },
    "artifact": {
      "source": "https://raw.githubusercontent.com/BgeeDB/confidence-information-ontology/master/src/ontology/cio.owl",
      "isRdf": true,
      "versionIri": "http://purl.obolibrary.org/obo/cio/releases/2015-03-10/cio.owl",
      "etag": "\"663bfc653b8c7a5cf2e29ed2d34245734ee7329e0b8e2b613a78938492171215\"",
      "contentType": "text/plain",
      "fetchedAt": "2026-10-26T02:43:32.368Z"
    },
    "score": 54,
    "gross": 60,
    "earned": 60,
    "possible": 100,
    "qualityApplies": true,
    "penalty": {
      "score": -6,
      "reason": "1.7 years → 4 × max(0, 1.7 − 1); 3 errors",
      "steps": [
        {
          "label": "Time since last activity",
          "pts": -3,
          "detail": "1.7 years → 4 × max(0, 1.7 − 1)"
        },
        {
          "label": "Inactive status",
          "pts": 0,
          "detail": "not archived, legacy or inactive"
        },
        {
          "label": "Consistency",
          "pts": 0,
          "detail": "consistent, no unsatisfiable classes"
        },
        {
          "label": "ROBOT report errors",
          "pts": -3,
          "detail": "3 errors"
        }
      ]
    },
    "consistent": true,
    "grade": "D",
    "fair": 45,
    "breakdown": {
      "findable": {
        "score": 12,
        "max": 12,
        "steps": [
          {
            "label": "Persistent identifier (F1)",
            "pts": 4,
            "max": 4,
            "detail": "purl.obolibrary.org"
          },
          {
            "label": "Indexed in services (F4)",
            "pts": 5,
            "max": 5,
            "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing"
          },
          {
            "label": "Citable reference (F2)",
            "pts": 3,
            "max": 3,
            "detail": "doi:10.1093/database/bav043"
          }
        ],
        "notes": []
      },
      "accessible": {
        "score": 12,
        "max": 12,
        "steps": [
          {
            "label": "Homepage reachable",
            "pts": 3,
            "max": 3,
            "detail": "HTTP 200"
          },
          {
            "label": "Artefact retrievable over HTTP(S) (A1)",
            "pts": 6,
            "max": 6,
            "detail": "download HTTP 200"
          },
          {
            "label": "Metadata persists in a registry (A2)",
            "pts": 3,
            "max": 3,
            "detail": "OBO Foundry, Bioregistry"
          }
        ],
        "notes": []
      },
      "interoperable": {
        "score": 10,
        "max": 12,
        "steps": [
          {
            "label": "Formal machine-readable format (I1)",
            "pts": 5,
            "max": 5,
            "detail": "OWL, OBO"
          },
          {
            "label": "Semantic-web IRIs (I2)",
            "pts": 3,
            "max": 3,
            "detail": "OWL, OBO"
          },
          {
            "label": "References other vocabularies (I3)",
            "pts": 2,
            "max": 4,
            "detail": "imports 1: iao"
          }
        ],
        "notes": [
          "References other vocabularies (I3): imports 1: iao"
        ]
      },
      "reusable": {
        "score": 11,
        "max": 12,
        "steps": [
          {
            "label": "Clear license (R1.1)",
            "pts": 5,
            "max": 5,
            "detail": "CC0 1.0"
          },
          {
            "label": "Release provenance (R1.2)",
            "pts": 4,
            "max": 4,
            "detail": "2015-03-10 (version IRI in the artefact)"
          },
          {
            "label": "Community standards (R1.3)",
            "pts": 2,
            "max": 3,
            "detail": "OBO principles: 9/13 checks pass"
          }
        ],
        "notes": [
          "Community standards (R1.3): OBO principles: 9/13 checks pass"
        ]
      },
      "quality": {
        "score": 11,
        "max": 20,
        "steps": [
          {
            "label": "Logical consistency",
            "pts": 10,
            "max": 10,
            "detail": "consistent, 0 unsatisfiable classes (OBO Dashboard)"
          },
          {
            "label": "OWL 2 DL profile",
            "pts": 0,
            "max": 2,
            "detail": "outside OWL 2 DL"
          },
          {
            "label": "Upper-ontology alignment",
            "pts": 0,
            "max": 3,
            "detail": "no BFO/COB/DOLCE import found"
          },
          {
            "label": "Standard relations (RO)",
            "pts": 0,
            "max": 1,
            "detail": "does not import the Relation Ontology"
          },
          {
            "label": "ROBOT report: no errors",
            "pts": 0,
            "max": 2,
            "detail": "3 errors"
          },
          {
            "label": "ROBOT report: warning density",
            "pts": 1,
            "max": 1,
            "detail": "1 warnings / 44 classes = 0.02"
          },
          {
            "label": "Pitfall scan: no critical pitfalls",
            "pts": 0,
            "max": 1,
            "detail": "no pitfall scan yet; ROBOT report has 3 errors"
          }
        ],
        "notes": [
          "OWL 2 DL profile: outside OWL 2 DL",
          "Upper-ontology alignment: no BFO/COB/DOLCE import found",
          "Standard relations (RO): does not import the Relation Ontology",
          "ROBOT report: no errors: 3 errors",
          "Pitfall scan: no critical pitfalls: no pitfall scan yet; ROBOT report has 3 errors"
        ]
      },
      "maintenance": {
        "score": 2,
        "max": 16,
        "steps": [
          {
            "label": "Recency",
            "pts": 2,
            "max": 10,
            "detail": "2025-02-03 → 20.7 months (≤ 2 years)"
          },
          {
            "label": "Release cadence (12 months)",
            "pts": 0,
            "max": 6,
            "detail": "0 releases (OLS version IRI)"
          }
        ],
        "notes": [
          "Recency: 2025-02-03 → 20.7 months (≤ 2 years)",
          "Release cadence (12 months): 0 releases (OLS version IRI)"
        ]
      },
      "adoption": {
        "score": 2,
        "max": 16,
        "steps": [
          {
            "label": "Documented adopting projects",
            "pts": 0,
            "max": 7,
            "detail": "0 projects"
          },
          {
            "label": "Reused by other ontologies",
            "pts": 1,
            "max": 4,
            "detail": "1: valuesets"
          },
          {
            "label": "Community signal",
            "pts": 1,
            "max": 5,
            "detail": "max(stars 5 → 1, citations 37 → 1)"
          }
        ],
        "notes": [
          "Documented adopting projects: 0 projects",
          "Reused by other ontologies: 1: valuesets",
          "Community signal: max(stars 5 → 1, citations 37 → 1)"
        ]
      }
    },
    "lastActivity": "2025-02-03T13:50:15.000Z",
    "adopterCount": 0,
    "reuseCount": 1,
    "importCount": 1,
    "registries": [
      "OLS",
      "BioPortal",
      "OBO Foundry",
      "Bioregistry",
      "FAIRsharing"
    ],
    "evaluatedVersion": {
      "label": "2015-03-10",
      "from": "version IRI in the artefact",
      "value": "http://purl.obolibrary.org/obo/cio/releases/2015-03-10/cio.owl",
      "inArtefact": true,
      "all": [
        {
          "label": "2015-03-10",
          "from": "version IRI in the artefact",
          "value": "http://purl.obolibrary.org/obo/cio/releases/2015-03-10/cio.owl",
          "inArtefact": true
        },
        {
          "label": "2015-03-10",
          "from": "OLS",
          "value": "http://purl.obolibrary.org/obo/cio/releases/2015-03-10/cio.owl"
        },
        {
          "label": "commit d2ae564",
          "from": "master at evaluation time",
          "value": "d2ae564a6dd3b82c7939b0cf9e0bf45a49e91aa3"
        }
      ]
    },
    "evaluatedAt": "2026-10-26T02:43:32.987Z",
    "runId": "2026-10-26T02-37-38Z",
    "adopters": []
  },
  "history": [
    {
      "runId": "2026-10-26T02-37-38Z",
      "at": "2026-10-26T03:31:18.947Z",
      "score": 54,
      "grade": "D",
      "fair": 45,
      "version": "2015-03-10",
      "terms": 44,
      "stars": 5,
      "license": "CC0 1.0",
      "lastActivity": "2025-02-03T13:50:15.000Z",
      "adopters": 0,
      "links": {
        "homepage": "ok",
        "repository": "ok",
        "download": "ok"
      },
      "archived": false,
      "rubric": "3.4",
      "snapshot": "https://schemascope.org/runs/2026-10-26T02-37-38Z.json"
    }
  ],
  "changes": [],
  "recordProvenance": {
    "source": "harvest",
    "retrievedAt": "2026-10-25T21:49:00Z",
    "registries": [
      {
        "registry": "Bioregistry",
        "key": "bioregistry",
        "id": "cio",
        "url": "https://bioregistry.io/api/registry/cio",
        "retrievedAt": "2026-10-25T21:49:00Z"
      },
      {
        "registry": "OBO Foundry",
        "key": "obo",
        "id": "cio",
        "url": "https://obofoundry.org/ontology/cio.html",
        "retrievedAt": "2026-10-25T21:49:00Z"
      },
      {
        "registry": "OLS (EMBL-EBI)",
        "key": "ols",
        "id": "cio",
        "url": "https://www.ebi.ac.uk/ols4/ontologies/cio",
        "retrievedAt": "2026-10-25T21:49:00Z"
      }
    ],
    "fields": {
      "acronym": "Bioregistry",
      "name": "Bioregistry",
      "description": "Bioregistry",
      "homepage": "Bioregistry",
      "repository": "Bioregistry",
      "download": "Bioregistry",
      "formats": "Bioregistry",
      "license": "Bioregistry",
      "ols": "Bioregistry",
      "obo": "Bioregistry",
      "bioportal": "Bioregistry",
      "publications": "Bioregistry",
      "tags": "Bioregistry"
    }
  },
  "evaluationProvenance": {
    "@context": {
      "prov": "http://www.w3.org/ns/prov#",
      "schemascope": "https://schemascope.org/ns#"
    },
    "@id": "https://schemascope.org/o/cio/#evaluation",
    "@type": "prov:Entity",
    "prov:specializationOf": {
      "@id": "http://purl.obolibrary.org/obo/cio.owl",
      "schemascope:evaluatedVersion": "http://purl.obolibrary.org/obo/cio/releases/2015-03-10/cio.owl"
    },
    "prov:wasGeneratedBy": {
      "@id": "https://schemascope.org/runs/2026-10-26T02-37-38Z",
      "@type": "prov:Activity",
      "prov:startedAtTime": "2026-10-26T02:37:38.997Z",
      "prov:endedAtTime": "2026-10-26T03:31:18.947Z",
      "prov:wasAssociatedWith": {
        "@id": "https://schemascope.org/ns#evaluator",
        "@type": "prov:SoftwareAgent",
        "schemascope:version": "2.0.0"
      },
      "prov:used": [
        {
          "@id": "https://github.com/BgeeDB/confidence-information-ontology",
          "prov:atTime": "2026-10-26T02:43:32.547Z"
        },
        {
          "@id": "https://github.com/BgeeDB/confidence-information-ontology",
          "prov:atTime": "2026-10-26T02:43:32.547Z"
        },
        {
          "@id": "http://purl.obolibrary.org/obo/cio.owl",
          "prov:atTime": "2026-10-26T02:43:32.351Z"
        },
        {
          "@id": "https://raw.githubusercontent.com/BgeeDB/confidence-information-ontology/master/src/ontology/cio.owl",
          "prov:atTime": "2026-10-26T02:43:32.368Z"
        },
        {
          "@id": "https://github.com/BgeeDB/confidence-information-ontology.git/info/refs?service=git-upload-pack",
          "prov:atTime": "2026-10-26T02:43:32.297Z"
        },
        {
          "@id": "https://api.github.com/repos/BgeeDB/confidence-information-ontology",
          "prov:atTime": "2026-10-26T02:43:32.753Z"
        },
        {
          "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/cio",
          "prov:atTime": "2026-10-26T02:43:32.296Z"
        },
        {
          "@id": "https://obofoundry.org/registry/ontologies.jsonld",
          "prov:atTime": "2026-10-26T02:37:39.556Z"
        },
        {
          "@id": "https://dashboard.obofoundry.org/dashboard/dashboard-results.json",
          "prov:atTime": "2026-10-26T02:37:39.856Z"
        },
        {
          "@id": "https://bioregistry.io/api/registry/cio",
          "prov:atTime": "2026-10-26T02:43:32.198Z"
        },
        {
          "@id": "https://api.crossref.org/works/10.1093%2Fdatabase%2Fbav043",
          "prov:atTime": "2026-10-26T02:43:32.254Z"
        }
      ]
    },
    "prov:generatedAtTime": "2026-10-26T02:43:32.987Z"
  }
}