{
  "id": "gramene-growthstage",
  "acronym": "GRO",
  "name": "Gramene Growth Stage Ontology",
  "category": "life",
  "kind": "ontology",
  "description": "Gramene is a comparative genome mapping database for grasses and crop plants. It combines a semi-automatically generated database of cereal genomic and expressed sequence tag sequences, genetic maps, map relations, quantitative trait loci (QTL), and publications, with a curated database of mutants (genes and alleles), molecular markers, and proteins. This collection refers to growth stage ontology information in Gramene.",
  "formats": [
    "OWL"
  ],
  "homepage": "http://www.gramene.org/plant_ontology/",
  "download": "http://aber-owl.net/media/ontologies/GRO-CPGA/1/gro-cpga.owl",
  "obo": "gro",
  "bioportal": "GRO-CPGA",
  "bioregistry": "gramene.growthstage",
  "status": "legacy",
  "publications": [],
  "usedBy": [],
  "tags": [
    "anatomy",
    "life science",
    "morphology",
    "obo",
    "ontology",
    "structure"
  ],
  "url": "https://schemascope.org/o/gramene-growthstage/",
  "evaluation": {
    "links": {
      "homepage": {
        "url": "http://www.gramene.org/plant_ontology/",
        "code": 200,
        "state": "ok",
        "resolvedUrl": "https://archive.gramene.org/plant_ontology/",
        "checkedAt": "2026-10-26T02:58:22.461Z"
      },
      "repository": null,
      "download": {
        "url": "http://aber-owl.net/media/ontologies/GRO-CPGA/1/gro-cpga.owl",
        "code": 200,
        "state": "ok",
        "resolvedUrl": "https://aber-owl.net/media/ontologies/GRO-CPGA/1/gro-cpga.owl",
        "lastModified": "2026-05-19T07:24:43.000Z",
        "checkedAt": "2026-10-26T02:58:23.062Z"
      }
    },
    "github": null,
    "ols": null,
    "obo": {
      "id": "gro",
      "status": "inactive",
      "domain": "anatomy and development",
      "license": null,
      "usages": [],
      "source": "https://obofoundry.org/registry/ontologies.jsonld",
      "fetchedAt": "2026-10-26T02:37:39.556Z"
    },
    "bioportal": null,
    "citations": [],
    "git": null,
    "tib": null,
    "dashboard": null,
    "quality": null,
    "oops": null,
    "releases": {
      "dates": [],
      "lastYear": 0,
      "from": null
    },
    "bioregistry": {
      "prefix": "gramene.growthstage",
      "name": "Gramene Growth Stage Ontology",
      "mappings": {
        "aberowl": "GRO-CPGA",
        "biocontext": "GRAMENE.GROWTHSTAGE",
        "bioportal": "GRO-CPGA",
        "fairsharing": "FAIRsharing.mtmsgm",
        "miriam": "gro",
        "n2t": "gramene.growthstage",
        "obofoundry": "gro",
        "prefixcommons": "gramene.po",
        "wikidata.entity": "Q114677888"
      },
      "dependsOn": [],
      "appearsIn": [],
      "license": null,
      "version": "unknown",
      "deprecated": true,
      "page": "https://bioregistry.io/gramene.growthstage",
      "source": "https://bioregistry.io/api/registry/gramene.growthstage",
      "fetchedAt": "2026-10-26T02:58:22.151Z"
    },
    "artifact": {
      "source": "https://aber-owl.net/media/ontologies/GRO-CPGA/1/gro-cpga.owl",
      "isRdf": true,
      "etag": "\"c570d355c9782d2f2539dbd69b7fa005\"",
      "contentType": "application/rdf+xml",
      "fetchedAt": "2026-10-26T02:58:23.582Z"
    },
    "score": 27,
    "gross": 37,
    "earned": 37,
    "possible": 100,
    "qualityApplies": true,
    "penalty": {
      "score": -10,
      "reason": "marked legacy",
      "steps": [
        {
          "label": "Time since last activity",
          "pts": 0,
          "detail": "0.4 years → 4 × max(0, 0.4 − 1)"
        },
        {
          "label": "Inactive status",
          "pts": -10,
          "detail": "marked legacy"
        },
        {
          "label": "Consistency",
          "pts": 0,
          "detail": "not yet checked by a reasoner"
        }
      ]
    },
    "consistent": null,
    "grade": "E",
    "fair": 29,
    "breakdown": {
      "findable": {
        "score": 9,
        "max": 12,
        "steps": [
          {
            "label": "Persistent identifier (F1)",
            "pts": 4,
            "max": 4,
            "detail": "purl.obolibrary.org"
          },
          {
            "label": "Indexed in services (F4)",
            "pts": 5,
            "max": 5,
            "detail": "4: BioPortal, OBO Foundry, Bioregistry, FAIRsharing"
          },
          {
            "label": "Citable reference (F2)",
            "pts": 0,
            "max": 3,
            "detail": "no reference publication listed"
          }
        ],
        "notes": [
          "Citable reference (F2): no reference publication listed"
        ]
      },
      "accessible": {
        "score": 12,
        "max": 12,
        "steps": [
          {
            "label": "Homepage reachable",
            "pts": 3,
            "max": 3,
            "detail": "HTTP 200"
          },
          {
            "label": "Artefact retrievable over HTTP(S) (A1)",
            "pts": 6,
            "max": 6,
            "detail": "download HTTP 200"
          },
          {
            "label": "Metadata persists in a registry (A2)",
            "pts": 3,
            "max": 3,
            "detail": "OBO Foundry, Bioregistry"
          }
        ],
        "notes": []
      },
      "interoperable": {
        "score": 8,
        "max": 12,
        "steps": [
          {
            "label": "Formal machine-readable format (I1)",
            "pts": 5,
            "max": 5,
            "detail": "OWL"
          },
          {
            "label": "Semantic-web IRIs (I2)",
            "pts": 3,
            "max": 3,
            "detail": "OWL"
          },
          {
            "label": "References other vocabularies (I3)",
            "pts": 0,
            "max": 4,
            "detail": "no imported vocabularies found"
          }
        ],
        "notes": [
          "References other vocabularies (I3): no imported vocabularies found"
        ]
      },
      "reusable": {
        "score": 0,
        "max": 12,
        "steps": [
          {
            "label": "Clear license (R1.1)",
            "pts": 0,
            "max": 5,
            "detail": "none found"
          },
          {
            "label": "Release provenance (R1.2)",
            "pts": 0,
            "max": 4,
            "detail": "no version in artefact, registry or release tags"
          },
          {
            "label": "Community standards (R1.3)",
            "pts": 0,
            "max": 3,
            "detail": "no independent compliance report (not on the OBO Dashboard)"
          }
        ],
        "notes": [
          "Clear license (R1.1): none found",
          "Release provenance (R1.2): no version in artefact, registry or release tags",
          "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)"
        ]
      },
      "quality": {
        "score": 0,
        "max": 20,
        "steps": [
          {
            "label": "Logical consistency",
            "pts": 0,
            "max": 10,
            "detail": "never checked by a reasoner"
          },
          {
            "label": "OWL 2 DL profile",
            "pts": 0,
            "max": 2,
            "detail": "profile not checked"
          },
          {
            "label": "Upper-ontology alignment",
            "pts": 0,
            "max": 3,
            "detail": "no BFO/COB/DOLCE import found"
          },
          {
            "label": "Standard relations (RO)",
            "pts": 0,
            "max": 1,
            "detail": "does not import the Relation Ontology"
          },
          {
            "label": "ROBOT report: no errors",
            "pts": 0,
            "max": 2,
            "detail": "no ROBOT report available"
          },
          {
            "label": "ROBOT report: warning density",
            "pts": 0,
            "max": 1,
            "detail": "no ROBOT report available"
          },
          {
            "label": "Pitfall scan: no critical pitfalls",
            "pts": 0,
            "max": 1,
            "detail": "no pitfall scan or ROBOT report yet"
          }
        ],
        "notes": [
          "Logical consistency: never checked by a reasoner",
          "OWL 2 DL profile: profile not checked",
          "Upper-ontology alignment: no BFO/COB/DOLCE import found",
          "Standard relations (RO): does not import the Relation Ontology",
          "ROBOT report: no errors: no ROBOT report available",
          "ROBOT report: warning density: no ROBOT report available",
          "Pitfall scan: no critical pitfalls: no pitfall scan or ROBOT report yet"
        ]
      },
      "maintenance": {
        "score": 8,
        "max": 16,
        "steps": [
          {
            "label": "Recency",
            "pts": 8,
            "max": 10,
            "detail": "2026-05-19 → 5.3 months (≤ 6 months)"
          },
          {
            "label": "Release cadence (12 months)",
            "pts": 0,
            "max": 6,
            "detail": "0 releases"
          }
        ],
        "notes": [
          "Recency: 2026-05-19 → 5.3 months (≤ 6 months)",
          "Release cadence (12 months): 0 releases"
        ]
      },
      "adoption": {
        "score": 0,
        "max": 16,
        "steps": [
          {
            "label": "Documented adopting projects",
            "pts": 0,
            "max": 7,
            "detail": "0 projects"
          },
          {
            "label": "Reused by other ontologies",
            "pts": 0,
            "max": 4,
            "detail": "0"
          },
          {
            "label": "Community signal",
            "pts": 0,
            "max": 5,
            "detail": "max(stars 0 → 0, citations 0 → 0)"
          }
        ],
        "notes": [
          "Documented adopting projects: 0 projects",
          "Reused by other ontologies: 0",
          "Community signal: max(stars 0 → 0, citations 0 → 0)"
        ]
      }
    },
    "lastActivity": "2026-05-19T07:24:43.000Z",
    "adopterCount": 0,
    "reuseCount": 0,
    "importCount": 0,
    "registries": [
      "BioPortal",
      "OBO Foundry",
      "Bioregistry",
      "FAIRsharing"
    ],
    "evaluatedVersion": {
      "label": "file of 2026-05-19",
      "from": "Last-Modified of the download",
      "value": "2026-05-19T07:24:43.000Z",
      "all": [
        {
          "label": "file of 2026-05-19",
          "from": "Last-Modified of the download",
          "value": "2026-05-19T07:24:43.000Z"
        }
      ]
    },
    "evaluatedAt": "2026-10-26T02:58:23.582Z",
    "runId": "2026-10-26T02-37-38Z",
    "adopters": []
  },
  "history": [
    {
      "runId": "2026-10-26T02-37-38Z",
      "at": "2026-10-26T03:31:18.947Z",
      "score": 27,
      "grade": "E",
      "fair": 29,
      "version": "file of 2026-05-19",
      "terms": null,
      "stars": null,
      "license": null,
      "lastActivity": "2026-05-19T07:24:43.000Z",
      "adopters": 0,
      "links": {
        "homepage": "ok",
        "download": "ok"
      },
      "archived": false,
      "rubric": "3.4",
      "snapshot": "https://schemascope.org/runs/2026-10-26T02-37-38Z.json"
    }
  ],
  "changes": [],
  "recordProvenance": {
    "source": "harvest",
    "retrievedAt": "2026-10-25T21:49:00Z",
    "registries": [
      {
        "registry": "Bioregistry",
        "key": "bioregistry",
        "id": "gramene.growthstage",
        "url": "https://bioregistry.io/api/registry/gramene.growthstage",
        "retrievedAt": "2026-10-25T21:49:00Z"
      },
      {
        "registry": "OBO Foundry",
        "key": "obo",
        "id": "gro",
        "url": "https://obofoundry.org/ontology/gro.html",
        "retrievedAt": "2026-10-25T21:49:00Z"
      }
    ],
    "fields": {
      "acronym": "Bioregistry",
      "name": "Bioregistry",
      "description": "Bioregistry",
      "homepage": "Bioregistry",
      "download": "Bioregistry",
      "formats": "Bioregistry",
      "obo": "Bioregistry",
      "bioportal": "Bioregistry",
      "tags": "Bioregistry"
    }
  },
  "evaluationProvenance": {
    "@context": {
      "prov": "http://www.w3.org/ns/prov#",
      "schemascope": "https://schemascope.org/ns#"
    },
    "@id": "https://schemascope.org/o/gramene-growthstage/#evaluation",
    "@type": "prov:Entity",
    "prov:specializationOf": {
      "@id": "http://aber-owl.net/media/ontologies/GRO-CPGA/1/gro-cpga.owl",
      "schemascope:evaluatedVersion": "2026-05-19T07:24:43.000Z"
    },
    "prov:wasGeneratedBy": {
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      "@type": "prov:Activity",
      "prov:startedAtTime": "2026-10-26T02:37:38.997Z",
      "prov:endedAtTime": "2026-10-26T03:31:18.947Z",
      "prov:wasAssociatedWith": {
        "@id": "https://schemascope.org/ns#evaluator",
        "@type": "prov:SoftwareAgent",
        "schemascope:version": "2.0.0"
      },
      "prov:used": [
        {
          "@id": "http://www.gramene.org/plant_ontology/",
          "prov:atTime": "2026-10-26T02:58:22.461Z"
        },
        {
          "@id": "http://aber-owl.net/media/ontologies/GRO-CPGA/1/gro-cpga.owl",
          "prov:atTime": "2026-10-26T02:58:23.062Z"
        },
        {
          "@id": "https://aber-owl.net/media/ontologies/GRO-CPGA/1/gro-cpga.owl",
          "prov:atTime": "2026-10-26T02:58:23.582Z"
        },
        {
          "@id": "https://obofoundry.org/registry/ontologies.jsonld",
          "prov:atTime": "2026-10-26T02:37:39.556Z"
        },
        {
          "@id": "https://bioregistry.io/api/registry/gramene.growthstage",
          "prov:atTime": "2026-10-26T02:58:22.151Z"
        }
      ]
    },
    "prov:generatedAtTime": "2026-10-26T02:58:23.582Z"
  }
}