{
  "id": "mamo",
  "acronym": "MAMO",
  "name": "Mathematical modeling ontology",
  "category": "computing",
  "domains": [
    "life",
    "physical"
  ],
  "kind": "ontology",
  "description": "The Mathematical Modelling Ontology (MAMO) is a classification of the types of mathematical models used mostly in the life sciences, their variables, relationships and other relevant features.",
  "formats": [
    "OWL",
    "OBO",
    "RDF"
  ],
  "license": "Artistic-2.0",
  "homepage": "http://sourceforge.net/p/mamo-ontology/wiki/Home/",
  "repository": "https://github.com/cmungall/mamo",
  "download": "https://github.com/cmungall/mamo/raw/refs/heads/main/mamo.owl",
  "ols": "mamo",
  "obo": "mamo",
  "bioportal": "MAMO",
  "bioregistry": "mamo",
  "publications": [],
  "usedBy": [],
  "tags": [
    "computational biology",
    "mathematics",
    "obo",
    "ontology",
    "systems biology"
  ],
  "url": "https://schemascope.org/o/mamo/",
  "evaluation": {
    "links": {
      "homepage": {
        "url": "http://sourceforge.net/p/mamo-ontology/wiki/Home/",
        "code": 200,
        "state": "ok",
        "resolvedUrl": "https://sourceforge.net/p/mamo-ontology/wiki/Home/",
        "checkedAt": "2026-10-26T03:05:06.760Z"
      },
      "repository": {
        "url": "https://github.com/cmungall/mamo",
        "code": 200,
        "state": "ok",
        "checkedAt": "2026-10-26T03:05:06.608Z"
      },
      "download": {
        "url": "https://github.com/cmungall/mamo/raw/refs/heads/main/mamo.owl",
        "code": 200,
        "state": "ok",
        "resolvedUrl": "https://raw.githubusercontent.com/cmungall/mamo/refs/heads/main/mamo.owl",
        "checkedAt": "2026-10-26T03:05:06.357Z"
      }
    },
    "github": {
      "slug": "cmungall/mamo",
      "stars": 0,
      "forks": 0,
      "openIssues": 0,
      "pushedAt": "2026-03-31T19:12:26Z",
      "archived": false,
      "license": null,
      "source": "https://api.github.com/repos/cmungall/mamo",
      "fetchedAt": "2026-10-26T03:05:06.502Z"
    },
    "ols": {
      "portal": "OLS (EMBL-EBI)",
      "id": "mamo",
      "api": "v2",
      "title": "Mathematical Modelling Ontology",
      "iri": "http://identifiers.org/mamo",
      "versionIri": null,
      "version": "2023-02-03",
      "releaseDate": null,
      "terms": 106,
      "properties": 9,
      "individuals": 0,
      "importsFrom": [
        "skos"
      ],
      "exportsTo": [],
      "languages": [
        "en"
      ],
      "loaded": "2026-10-25T00:12:57.802962518",
      "sourceFileTimestamp": "Sun Oct 25 00:12:56 UTC 2026",
      "obsolete": false,
      "status": "LOADED",
      "page": "https://www.ebi.ac.uk/ols4/ontologies/mamo",
      "source": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/mamo",
      "fetchedAt": "2026-10-26T03:05:06.150Z"
    },
    "obo": {
      "id": "mamo",
      "status": "orphaned",
      "domain": "simulation",
      "license": "Artistic License 2.0",
      "usages": [],
      "source": "https://obofoundry.org/registry/ontologies.jsonld",
      "fetchedAt": "2026-10-26T02:37:39.556Z"
    },
    "bioportal": null,
    "citations": [],
    "git": {
      "commit": "08d984adda48d124e2c5af9db6327acc18c5e977",
      "ref": "main",
      "headTag": null,
      "latestTag": null,
      "tagCount": 0,
      "tagDates": [],
      "url": "https://github.com/cmungall/mamo/tree/08d984adda48d124e2c5af9db6327acc18c5e977",
      "source": "https://github.com/cmungall/mamo.git/info/refs?service=git-upload-pack",
      "fetchedAt": "2026-10-26T03:05:06.123Z"
    },
    "tib": null,
    "dashboard": null,
    "quality": null,
    "oops": null,
    "releases": {
      "dates": [],
      "lastYear": 0,
      "from": null
    },
    "bioregistry": {
      "prefix": "mamo",
      "name": "Mathematical modeling ontology",
      "mappings": {
        "biocontext": "MAMO",
        "bioportal": "MAMO",
        "fairsharing": "FAIRsharing.kbz5jh",
        "miriam": "mamo",
        "n2t": "mamo",
        "obofoundry": "mamo",
        "ols": "mamo",
        "ontobee": "MAMO",
        "wikidata.entity": "Q113014441"
      },
      "dependsOn": [],
      "appearsIn": [],
      "license": "Artistic-2.0",
      "version": "2023-02-03",
      "deprecated": false,
      "page": "https://bioregistry.io/mamo",
      "source": "https://bioregistry.io/api/registry/mamo",
      "fetchedAt": "2026-10-26T03:05:06.041Z"
    },
    "artifact": {
      "source": "https://raw.githubusercontent.com/cmungall/mamo/refs/heads/main/mamo.owl",
      "isRdf": true,
      "versionIri": "http://purl.obolibrary.org/obo/mamo/releases/2026-03-31/mamo.owl",
      "versionInfo": "2026-03-31",
      "etag": "\"08549cdb6453b5318d74d871adc5ba9a304a74696eaf128231e299e7af69adf8\"",
      "contentType": "text/plain",
      "fetchedAt": "2026-10-26T03:05:06.390Z"
    },
    "score": 30,
    "gross": 40,
    "earned": 40,
    "possible": 100,
    "qualityApplies": true,
    "penalty": {
      "score": -10,
      "reason": "orphaned in OBO Foundry",
      "steps": [
        {
          "label": "Time since last activity",
          "pts": 0,
          "detail": "0.6 years → 4 × max(0, 0.6 − 1)"
        },
        {
          "label": "Inactive status",
          "pts": -10,
          "detail": "orphaned in OBO Foundry"
        },
        {
          "label": "Consistency",
          "pts": 0,
          "detail": "not yet checked by a reasoner"
        }
      ]
    },
    "consistent": null,
    "grade": "E",
    "fair": 35,
    "breakdown": {
      "findable": {
        "score": 9,
        "max": 12,
        "steps": [
          {
            "label": "Persistent identifier (F1)",
            "pts": 4,
            "max": 4,
            "detail": "purl.obolibrary.org"
          },
          {
            "label": "Indexed in services (F4)",
            "pts": 5,
            "max": 5,
            "detail": "5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing"
          },
          {
            "label": "Citable reference (F2)",
            "pts": 0,
            "max": 3,
            "detail": "no reference publication listed"
          }
        ],
        "notes": [
          "Citable reference (F2): no reference publication listed"
        ]
      },
      "accessible": {
        "score": 12,
        "max": 12,
        "steps": [
          {
            "label": "Homepage reachable",
            "pts": 3,
            "max": 3,
            "detail": "HTTP 200"
          },
          {
            "label": "Artefact retrievable over HTTP(S) (A1)",
            "pts": 6,
            "max": 6,
            "detail": "download HTTP 200"
          },
          {
            "label": "Metadata persists in a registry (A2)",
            "pts": 3,
            "max": 3,
            "detail": "OBO Foundry, Bioregistry"
          }
        ],
        "notes": []
      },
      "interoperable": {
        "score": 8,
        "max": 12,
        "steps": [
          {
            "label": "Formal machine-readable format (I1)",
            "pts": 5,
            "max": 5,
            "detail": "OWL, OBO, RDF"
          },
          {
            "label": "Semantic-web IRIs (I2)",
            "pts": 3,
            "max": 3,
            "detail": "OWL, OBO, RDF"
          },
          {
            "label": "References other vocabularies (I3)",
            "pts": 0,
            "max": 4,
            "detail": "no imported vocabularies found"
          }
        ],
        "notes": [
          "References other vocabularies (I3): no imported vocabularies found"
        ]
      },
      "reusable": {
        "score": 6,
        "max": 12,
        "steps": [
          {
            "label": "Clear license (R1.1)",
            "pts": 2,
            "max": 5,
            "detail": "Artistic-2.0 (not a recognised open license)"
          },
          {
            "label": "Release provenance (R1.2)",
            "pts": 4,
            "max": 4,
            "detail": "2026-03-31 (version IRI in the artefact)"
          },
          {
            "label": "Community standards (R1.3)",
            "pts": 0,
            "max": 3,
            "detail": "no independent compliance report (not on the OBO Dashboard)"
          }
        ],
        "notes": [
          "Clear license (R1.1): Artistic-2.0 (not a recognised open license)",
          "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)"
        ]
      },
      "quality": {
        "score": 0,
        "max": 20,
        "steps": [
          {
            "label": "Logical consistency",
            "pts": 0,
            "max": 10,
            "detail": "never checked by a reasoner"
          },
          {
            "label": "OWL 2 DL profile",
            "pts": 0,
            "max": 2,
            "detail": "profile not checked"
          },
          {
            "label": "Upper-ontology alignment",
            "pts": 0,
            "max": 3,
            "detail": "no BFO/COB/DOLCE import found"
          },
          {
            "label": "Standard relations (RO)",
            "pts": 0,
            "max": 1,
            "detail": "does not import the Relation Ontology"
          },
          {
            "label": "ROBOT report: no errors",
            "pts": 0,
            "max": 2,
            "detail": "no ROBOT report available"
          },
          {
            "label": "ROBOT report: warning density",
            "pts": 0,
            "max": 1,
            "detail": "no ROBOT report available"
          },
          {
            "label": "Pitfall scan: no critical pitfalls",
            "pts": 0,
            "max": 1,
            "detail": "no pitfall scan or ROBOT report yet"
          }
        ],
        "notes": [
          "Logical consistency: never checked by a reasoner",
          "OWL 2 DL profile: profile not checked",
          "Upper-ontology alignment: no BFO/COB/DOLCE import found",
          "Standard relations (RO): does not import the Relation Ontology",
          "ROBOT report: no errors: no ROBOT report available",
          "ROBOT report: warning density: no ROBOT report available",
          "Pitfall scan: no critical pitfalls: no pitfall scan or ROBOT report yet"
        ]
      },
      "maintenance": {
        "score": 5,
        "max": 16,
        "steps": [
          {
            "label": "Recency",
            "pts": 5,
            "max": 10,
            "detail": "2026-03-31 → 6.8 months (≤ 1 year)"
          },
          {
            "label": "Release cadence (12 months)",
            "pts": 0,
            "max": 6,
            "detail": "0 releases"
          }
        ],
        "notes": [
          "Recency: 2026-03-31 → 6.8 months (≤ 1 year)",
          "Release cadence (12 months): 0 releases"
        ]
      },
      "adoption": {
        "score": 0,
        "max": 16,
        "steps": [
          {
            "label": "Documented adopting projects",
            "pts": 0,
            "max": 7,
            "detail": "0 projects"
          },
          {
            "label": "Reused by other ontologies",
            "pts": 0,
            "max": 4,
            "detail": "0"
          },
          {
            "label": "Community signal",
            "pts": 0,
            "max": 5,
            "detail": "max(stars 0 → 0, citations 0 → 0)"
          }
        ],
        "notes": [
          "Documented adopting projects: 0 projects",
          "Reused by other ontologies: 0",
          "Community signal: max(stars 0 → 0, citations 0 → 0)"
        ]
      }
    },
    "lastActivity": "2026-03-31T19:12:26.000Z",
    "adopterCount": 0,
    "reuseCount": 0,
    "importCount": 0,
    "registries": [
      "OLS",
      "BioPortal",
      "OBO Foundry",
      "Bioregistry",
      "FAIRsharing"
    ],
    "evaluatedVersion": {
      "label": "2026-03-31",
      "from": "version IRI in the artefact",
      "value": "http://purl.obolibrary.org/obo/mamo/releases/2026-03-31/mamo.owl",
      "inArtefact": true,
      "all": [
        {
          "label": "2026-03-31",
          "from": "version IRI in the artefact",
          "value": "http://purl.obolibrary.org/obo/mamo/releases/2026-03-31/mamo.owl",
          "inArtefact": true
        },
        {
          "label": "2026-03-31",
          "from": "version info in the artefact",
          "value": "2026-03-31",
          "inArtefact": true
        },
        {
          "label": "2023-02-03",
          "from": "OLS",
          "value": "2023-02-03"
        },
        {
          "label": "commit 08d984a",
          "from": "main at evaluation time",
          "value": "08d984adda48d124e2c5af9db6327acc18c5e977"
        }
      ]
    },
    "evaluatedAt": "2026-10-26T03:05:06.923Z",
    "runId": "2026-10-26T02-37-38Z",
    "adopters": []
  },
  "history": [
    {
      "runId": "2026-10-26T02-37-38Z",
      "at": "2026-10-26T03:31:18.947Z",
      "score": 30,
      "grade": "E",
      "fair": 35,
      "version": "2026-03-31",
      "terms": 106,
      "stars": 0,
      "license": "Artistic License 2.0",
      "lastActivity": "2026-03-31T19:12:26.000Z",
      "adopters": 0,
      "links": {
        "homepage": "ok",
        "repository": "ok",
        "download": "ok"
      },
      "archived": false,
      "rubric": "3.4",
      "snapshot": "https://schemascope.org/runs/2026-10-26T02-37-38Z.json"
    }
  ],
  "changes": [],
  "recordProvenance": {
    "source": "harvest",
    "retrievedAt": "2026-10-25T21:49:00Z",
    "registries": [
      {
        "registry": "Bioregistry",
        "key": "bioregistry",
        "id": "mamo",
        "url": "https://bioregistry.io/api/registry/mamo",
        "retrievedAt": "2026-10-25T21:49:00Z"
      },
      {
        "registry": "OBO Foundry",
        "key": "obo",
        "id": "mamo",
        "url": "https://obofoundry.org/ontology/mamo.html",
        "retrievedAt": "2026-10-25T21:49:00Z"
      },
      {
        "registry": "OLS (EMBL-EBI)",
        "key": "ols",
        "id": "mamo",
        "url": "https://www.ebi.ac.uk/ols4/ontologies/mamo",
        "retrievedAt": "2026-10-25T21:49:00Z"
      }
    ],
    "fields": {
      "acronym": "Bioregistry",
      "name": "Bioregistry",
      "description": "Bioregistry",
      "homepage": "Bioregistry",
      "repository": "Bioregistry",
      "download": "Bioregistry",
      "formats": "Bioregistry",
      "license": "Bioregistry",
      "ols": "Bioregistry",
      "obo": "Bioregistry",
      "bioportal": "Bioregistry",
      "tags": "Bioregistry"
    }
  },
  "evaluationProvenance": {
    "@context": {
      "prov": "http://www.w3.org/ns/prov#",
      "schemascope": "https://schemascope.org/ns#"
    },
    "@id": "https://schemascope.org/o/mamo/#evaluation",
    "@type": "prov:Entity",
    "prov:specializationOf": {
      "@id": "https://github.com/cmungall/mamo/raw/refs/heads/main/mamo.owl",
      "schemascope:evaluatedVersion": "http://purl.obolibrary.org/obo/mamo/releases/2026-03-31/mamo.owl"
    },
    "prov:wasGeneratedBy": {
      "@id": "https://schemascope.org/runs/2026-10-26T02-37-38Z",
      "@type": "prov:Activity",
      "prov:startedAtTime": "2026-10-26T02:37:38.997Z",
      "prov:endedAtTime": "2026-10-26T03:31:18.947Z",
      "prov:wasAssociatedWith": {
        "@id": "https://schemascope.org/ns#evaluator",
        "@type": "prov:SoftwareAgent",
        "schemascope:version": "2.0.0"
      },
      "prov:used": [
        {
          "@id": "http://sourceforge.net/p/mamo-ontology/wiki/Home/",
          "prov:atTime": "2026-10-26T03:05:06.760Z"
        },
        {
          "@id": "https://github.com/cmungall/mamo",
          "prov:atTime": "2026-10-26T03:05:06.608Z"
        },
        {
          "@id": "https://github.com/cmungall/mamo/raw/refs/heads/main/mamo.owl",
          "prov:atTime": "2026-10-26T03:05:06.357Z"
        },
        {
          "@id": "https://raw.githubusercontent.com/cmungall/mamo/refs/heads/main/mamo.owl",
          "prov:atTime": "2026-10-26T03:05:06.390Z"
        },
        {
          "@id": "https://github.com/cmungall/mamo.git/info/refs?service=git-upload-pack",
          "prov:atTime": "2026-10-26T03:05:06.123Z"
        },
        {
          "@id": "https://api.github.com/repos/cmungall/mamo",
          "prov:atTime": "2026-10-26T03:05:06.502Z"
        },
        {
          "@id": "https://www.ebi.ac.uk/ols4/api/v2/ontologies/mamo",
          "prov:atTime": "2026-10-26T03:05:06.150Z"
        },
        {
          "@id": "https://obofoundry.org/registry/ontologies.jsonld",
          "prov:atTime": "2026-10-26T02:37:39.556Z"
        },
        {
          "@id": "https://bioregistry.io/api/registry/mamo",
          "prov:atTime": "2026-10-26T03:05:06.041Z"
        }
      ]
    },
    "prov:generatedAtTime": "2026-10-26T03:05:06.923Z"
  }
}