{
  "id": "mirbase-family",
  "acronym": "mirbase.family",
  "name": "miRBase Families",
  "category": "life",
  "kind": "ontology",
  "description": "The miRBase database is a searchable database of published miRNA sequences and annotation. Each entry in the miRBase Sequence database represents a predicted hairpin portion of a miRNA transcript (termed mir in the database), with information on the location and sequence of the mature miRNA sequence (termed miR). Both hairpin and mature sequences are available for searching and browsing, and entries can also be retrieved by name, keyword, references and annotation. All sequence and annotation data are also available for download.",
  "formats": [
    "OWL",
    "OBO",
    "JSON"
  ],
  "license": "public-domain",
  "homepage": "http://www.mirbase.org",
  "download": "https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.owl",
  "bioregistry": "mirbase.family",
  "publications": [],
  "usedBy": [],
  "tags": [
    "gene",
    "mirbase",
    "mirna",
    "ontology"
  ],
  "url": "https://schemascope.org/o/mirbase-family/",
  "evaluation": {
    "links": {
      "homepage": {
        "url": "http://www.mirbase.org",
        "code": 0,
        "state": "dead",
        "error": "fetch failed",
        "checkedAt": "2026-10-26T03:06:28.080Z"
      },
      "repository": null,
      "download": {
        "url": "https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.owl",
        "code": 200,
        "state": "ok",
        "resolvedUrl": "https://raw.githubusercontent.com/biopragmatics/obo-db-ingest/main/export/mirbase.family/mirbase.family.owl",
        "checkedAt": "2026-10-26T03:06:08.059Z"
      }
    },
    "github": null,
    "ols": null,
    "obo": null,
    "bioportal": null,
    "citations": [],
    "git": null,
    "tib": null,
    "dashboard": null,
    "quality": null,
    "oops": null,
    "releases": {
      "dates": [],
      "lastYear": 0,
      "from": null
    },
    "bioregistry": {
      "prefix": "mirbase.family",
      "name": "miRBase Families",
      "mappings": {
        "wikidata.entity": "Q6826947"
      },
      "dependsOn": [],
      "appearsIn": [],
      "license": "public-domain",
      "version": null,
      "deprecated": false,
      "page": "https://bioregistry.io/mirbase.family",
      "source": "https://bioregistry.io/api/registry/mirbase.family",
      "fetchedAt": "2026-10-26T03:06:07.199Z"
    },
    "artifact": {
      "source": "https://raw.githubusercontent.com/biopragmatics/obo-db-ingest/main/export/mirbase.family/mirbase.family.owl",
      "isRdf": true,
      "versionIri": "https://w3id.org/biopragmatics/resources/mirbase.family/22.1/mirbase.family.ofn",
      "versionInfo": "22.1",
      "etag": "\"3ef7fcb6f65a27e64fa3415f3c5d42aeaf79a50b29665641e9267864555dab42\"",
      "contentType": "text/plain",
      "fetchedAt": "2026-10-26T03:06:07.852Z"
    },
    "score": 23,
    "gross": 28,
    "earned": 28,
    "possible": 100,
    "qualityApplies": true,
    "penalty": {
      "score": -5,
      "reason": "no commits, releases or dated files found",
      "steps": [
        {
          "label": "No activity evidence",
          "pts": -5,
          "detail": "no commits, releases or dated files found"
        },
        {
          "label": "Inactive status",
          "pts": 0,
          "detail": "not archived, legacy or inactive"
        },
        {
          "label": "Consistency",
          "pts": 0,
          "detail": "not yet checked by a reasoner"
        }
      ]
    },
    "consistent": null,
    "grade": "E",
    "fair": 28,
    "breakdown": {
      "findable": {
        "score": 5,
        "max": 12,
        "steps": [
          {
            "label": "Persistent identifier (F1)",
            "pts": 4,
            "max": 4,
            "detail": "w3id.org"
          },
          {
            "label": "Indexed in services (F4)",
            "pts": 1,
            "max": 5,
            "detail": "1: Bioregistry"
          },
          {
            "label": "Citable reference (F2)",
            "pts": 0,
            "max": 3,
            "detail": "no reference publication listed"
          }
        ],
        "notes": [
          "Indexed in services (F4): 1: Bioregistry",
          "Citable reference (F2): no reference publication listed"
        ]
      },
      "accessible": {
        "score": 9,
        "max": 12,
        "steps": [
          {
            "label": "Homepage reachable",
            "pts": 0,
            "max": 3,
            "detail": "HTTP fetch failed"
          },
          {
            "label": "Artefact retrievable over HTTP(S) (A1)",
            "pts": 6,
            "max": 6,
            "detail": "download HTTP 200"
          },
          {
            "label": "Metadata persists in a registry (A2)",
            "pts": 3,
            "max": 3,
            "detail": "Bioregistry"
          }
        ],
        "notes": [
          "Homepage reachable: HTTP fetch failed"
        ]
      },
      "interoperable": {
        "score": 8,
        "max": 12,
        "steps": [
          {
            "label": "Formal machine-readable format (I1)",
            "pts": 5,
            "max": 5,
            "detail": "OWL, OBO"
          },
          {
            "label": "Semantic-web IRIs (I2)",
            "pts": 3,
            "max": 3,
            "detail": "OWL, OBO"
          },
          {
            "label": "References other vocabularies (I3)",
            "pts": 0,
            "max": 4,
            "detail": "no imported vocabularies found"
          }
        ],
        "notes": [
          "References other vocabularies (I3): no imported vocabularies found"
        ]
      },
      "reusable": {
        "score": 6,
        "max": 12,
        "steps": [
          {
            "label": "Clear license (R1.1)",
            "pts": 2,
            "max": 5,
            "detail": "public-domain (not a recognised open license)"
          },
          {
            "label": "Release provenance (R1.2)",
            "pts": 4,
            "max": 4,
            "detail": "22.1 (version IRI in the artefact)"
          },
          {
            "label": "Community standards (R1.3)",
            "pts": 0,
            "max": 3,
            "detail": "no independent compliance report (not on the OBO Dashboard)"
          }
        ],
        "notes": [
          "Clear license (R1.1): public-domain (not a recognised open license)",
          "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)"
        ]
      },
      "quality": {
        "score": 0,
        "max": 20,
        "steps": [
          {
            "label": "Logical consistency",
            "pts": 0,
            "max": 10,
            "detail": "never checked by a reasoner"
          },
          {
            "label": "OWL 2 DL profile",
            "pts": 0,
            "max": 2,
            "detail": "profile not checked"
          },
          {
            "label": "Upper-ontology alignment",
            "pts": 0,
            "max": 3,
            "detail": "no BFO/COB/DOLCE import found"
          },
          {
            "label": "Standard relations (RO)",
            "pts": 0,
            "max": 1,
            "detail": "does not import the Relation Ontology"
          },
          {
            "label": "ROBOT report: no errors",
            "pts": 0,
            "max": 2,
            "detail": "no ROBOT report available"
          },
          {
            "label": "ROBOT report: warning density",
            "pts": 0,
            "max": 1,
            "detail": "no ROBOT report available"
          },
          {
            "label": "Pitfall scan: no critical pitfalls",
            "pts": 0,
            "max": 1,
            "detail": "no pitfall scan or ROBOT report yet"
          }
        ],
        "notes": [
          "Logical consistency: never checked by a reasoner",
          "OWL 2 DL profile: profile not checked",
          "Upper-ontology alignment: no BFO/COB/DOLCE import found",
          "Standard relations (RO): does not import the Relation Ontology",
          "ROBOT report: no errors: no ROBOT report available",
          "ROBOT report: warning density: no ROBOT report available",
          "Pitfall scan: no critical pitfalls: no pitfall scan or ROBOT report yet"
        ]
      },
      "maintenance": {
        "score": 0,
        "max": 16,
        "steps": [
          {
            "label": "Recency",
            "pts": 0,
            "max": 10,
            "detail": "no activity evidence"
          },
          {
            "label": "Release cadence (12 months)",
            "pts": 0,
            "max": 6,
            "detail": "0 releases"
          }
        ],
        "notes": [
          "Recency: no activity evidence",
          "Release cadence (12 months): 0 releases"
        ]
      },
      "adoption": {
        "score": 0,
        "max": 16,
        "steps": [
          {
            "label": "Documented adopting projects",
            "pts": 0,
            "max": 7,
            "detail": "0 projects"
          },
          {
            "label": "Reused by other ontologies",
            "pts": 0,
            "max": 4,
            "detail": "0"
          },
          {
            "label": "Community signal",
            "pts": 0,
            "max": 5,
            "detail": "max(stars 0 → 0, citations 0 → 0)"
          }
        ],
        "notes": [
          "Documented adopting projects: 0 projects",
          "Reused by other ontologies: 0",
          "Community signal: max(stars 0 → 0, citations 0 → 0)"
        ]
      }
    },
    "lastActivity": null,
    "adopterCount": 0,
    "reuseCount": 0,
    "importCount": 0,
    "registries": [
      "Bioregistry"
    ],
    "evaluatedVersion": {
      "label": "22.1",
      "from": "version IRI in the artefact",
      "value": "https://w3id.org/biopragmatics/resources/mirbase.family/22.1/mirbase.family.ofn",
      "inArtefact": true,
      "all": [
        {
          "label": "22.1",
          "from": "version IRI in the artefact",
          "value": "https://w3id.org/biopragmatics/resources/mirbase.family/22.1/mirbase.family.ofn",
          "inArtefact": true
        },
        {
          "label": "22.1",
          "from": "version info in the artefact",
          "value": "22.1",
          "inArtefact": true
        }
      ]
    },
    "evaluatedAt": "2026-10-26T03:06:28.081Z",
    "runId": "2026-10-26T02-37-38Z",
    "adopters": []
  },
  "history": [
    {
      "runId": "2026-10-26T02-37-38Z",
      "at": "2026-10-26T03:31:18.947Z",
      "score": 23,
      "grade": "E",
      "fair": 28,
      "version": "22.1",
      "terms": null,
      "stars": null,
      "license": null,
      "lastActivity": null,
      "adopters": 0,
      "links": {
        "homepage": "dead",
        "download": "ok"
      },
      "archived": false,
      "rubric": "3.4",
      "snapshot": "https://schemascope.org/runs/2026-10-26T02-37-38Z.json"
    }
  ],
  "changes": [],
  "recordProvenance": {
    "source": "harvest",
    "retrievedAt": "2026-10-25T21:49:00Z",
    "registries": [
      {
        "registry": "Bioregistry",
        "key": "bioregistry",
        "id": "mirbase.family",
        "url": "https://bioregistry.io/api/registry/mirbase.family",
        "retrievedAt": "2026-10-25T21:49:00Z"
      }
    ],
    "fields": {
      "acronym": "Bioregistry",
      "name": "Bioregistry",
      "description": "Bioregistry",
      "homepage": "Bioregistry",
      "download": "Bioregistry",
      "formats": "Bioregistry",
      "license": "Bioregistry",
      "tags": "Bioregistry"
    }
  },
  "evaluationProvenance": {
    "@context": {
      "prov": "http://www.w3.org/ns/prov#",
      "schemascope": "https://schemascope.org/ns#"
    },
    "@id": "https://schemascope.org/o/mirbase-family/#evaluation",
    "@type": "prov:Entity",
    "prov:specializationOf": {
      "@id": "https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.owl",
      "schemascope:evaluatedVersion": "https://w3id.org/biopragmatics/resources/mirbase.family/22.1/mirbase.family.ofn"
    },
    "prov:wasGeneratedBy": {
      "@id": "https://schemascope.org/runs/2026-10-26T02-37-38Z",
      "@type": "prov:Activity",
      "prov:startedAtTime": "2026-10-26T02:37:38.997Z",
      "prov:endedAtTime": "2026-10-26T03:31:18.947Z",
      "prov:wasAssociatedWith": {
        "@id": "https://schemascope.org/ns#evaluator",
        "@type": "prov:SoftwareAgent",
        "schemascope:version": "2.0.0"
      },
      "prov:used": [
        {
          "@id": "http://www.mirbase.org",
          "prov:atTime": "2026-10-26T03:06:28.080Z"
        },
        {
          "@id": "https://w3id.org/biopragmatics/resources/mirbase.family/mirbase.family.owl",
          "prov:atTime": "2026-10-26T03:06:08.059Z"
        },
        {
          "@id": "https://raw.githubusercontent.com/biopragmatics/obo-db-ingest/main/export/mirbase.family/mirbase.family.owl",
          "prov:atTime": "2026-10-26T03:06:07.852Z"
        },
        {
          "@id": "https://bioregistry.io/api/registry/mirbase.family",
          "prov:atTime": "2026-10-26T03:06:07.199Z"
        }
      ]
    },
    "prov:generatedAtTime": "2026-10-26T03:06:28.081Z"
  }
}