{
  "id": "pao",
  "acronym": "PAO",
  "name": "Plant Anatomy Ontology",
  "category": "life",
  "domains": [
    "agri"
  ],
  "kind": "ontology",
  "description": "REPLACED BY: Plant Ontology (PO). A controlled vocabulary of plant morphological and anatomical structures representing organs, tissues, cell types, and their biological relationships based on spatial and developmental organization. Note that this has been subsumed into the PO. This file is created by filtering plant_ontology_assert.obo to contain only terms from the plant anatomical entity branch of the PO. For more information, please see: http://palea.cgrb.oregonstate.edu/viewsvn/Poc/tags/live/",
  "formats": [
    "OWL",
    "OBO"
  ],
  "homepage": "http://www.plantontology.org",
  "obo": "pao",
  "bioportal": "PAE",
  "bioregistry": "pao",
  "status": "legacy",
  "publications": [],
  "usedBy": [],
  "tags": [
    "ontology"
  ],
  "url": "https://schemascope.org/o/pao/",
  "evaluation": {
    "links": {
      "homepage": {
        "url": "http://www.plantontology.org",
        "code": 200,
        "state": "ok",
        "resolvedUrl": "https://planteome.org/",
        "checkedAt": "2026-10-26T03:13:26.012Z"
      },
      "repository": null,
      "download": null
    },
    "github": null,
    "ols": null,
    "obo": {
      "id": "pao",
      "status": "inactive",
      "domain": "anatomy and development",
      "license": null,
      "usages": [],
      "source": "https://obofoundry.org/registry/ontologies.jsonld",
      "fetchedAt": "2026-10-26T02:37:39.556Z"
    },
    "bioportal": null,
    "citations": [],
    "git": null,
    "tib": null,
    "dashboard": null,
    "quality": null,
    "oops": null,
    "releases": {
      "dates": [],
      "lastYear": 0,
      "from": null
    },
    "bioregistry": {
      "prefix": "pao",
      "name": "Plant Anatomy Ontology",
      "mappings": {
        "biocontext": "PAO",
        "obofoundry": "pao",
        "wikidata.entity": "Q114677904"
      },
      "dependsOn": [],
      "appearsIn": [],
      "license": null,
      "version": null,
      "deprecated": true,
      "page": "https://bioregistry.io/pao",
      "source": "https://bioregistry.io/api/registry/pao",
      "fetchedAt": "2026-10-26T03:13:24.718Z"
    },
    "artifact": null,
    "score": 7,
    "gross": 22,
    "earned": 22,
    "possible": 100,
    "qualityApplies": true,
    "penalty": {
      "score": -15,
      "reason": "no commits, releases or dated files found; marked legacy",
      "steps": [
        {
          "label": "No activity evidence",
          "pts": -5,
          "detail": "no commits, releases or dated files found"
        },
        {
          "label": "Inactive status",
          "pts": -10,
          "detail": "marked legacy"
        },
        {
          "label": "Consistency",
          "pts": 0,
          "detail": "not yet checked by a reasoner"
        }
      ]
    },
    "consistent": null,
    "grade": "E",
    "fair": 22,
    "breakdown": {
      "findable": {
        "score": 8,
        "max": 12,
        "steps": [
          {
            "label": "Persistent identifier (F1)",
            "pts": 4,
            "max": 4,
            "detail": "purl.obolibrary.org"
          },
          {
            "label": "Indexed in services (F4)",
            "pts": 4,
            "max": 5,
            "detail": "3: BioPortal, OBO Foundry, Bioregistry"
          },
          {
            "label": "Citable reference (F2)",
            "pts": 0,
            "max": 3,
            "detail": "no reference publication listed"
          }
        ],
        "notes": [
          "Indexed in services (F4): 3: BioPortal, OBO Foundry, Bioregistry",
          "Citable reference (F2): no reference publication listed"
        ]
      },
      "accessible": {
        "score": 6,
        "max": 12,
        "steps": [
          {
            "label": "Homepage reachable",
            "pts": 3,
            "max": 3,
            "detail": "HTTP 200"
          },
          {
            "label": "Artefact retrievable over HTTP(S) (A1)",
            "pts": 0,
            "max": 6,
            "detail": "no download or repository listed"
          },
          {
            "label": "Metadata persists in a registry (A2)",
            "pts": 3,
            "max": 3,
            "detail": "OBO Foundry, Bioregistry"
          }
        ],
        "notes": [
          "Artefact retrievable over HTTP(S) (A1): no download or repository listed"
        ]
      },
      "interoperable": {
        "score": 8,
        "max": 12,
        "steps": [
          {
            "label": "Formal machine-readable format (I1)",
            "pts": 5,
            "max": 5,
            "detail": "OWL, OBO"
          },
          {
            "label": "Semantic-web IRIs (I2)",
            "pts": 3,
            "max": 3,
            "detail": "OWL, OBO"
          },
          {
            "label": "References other vocabularies (I3)",
            "pts": 0,
            "max": 4,
            "detail": "no imported vocabularies found"
          }
        ],
        "notes": [
          "References other vocabularies (I3): no imported vocabularies found"
        ]
      },
      "reusable": {
        "score": 0,
        "max": 12,
        "steps": [
          {
            "label": "Clear license (R1.1)",
            "pts": 0,
            "max": 5,
            "detail": "none found"
          },
          {
            "label": "Release provenance (R1.2)",
            "pts": 0,
            "max": 4,
            "detail": "no version in artefact, registry or release tags"
          },
          {
            "label": "Community standards (R1.3)",
            "pts": 0,
            "max": 3,
            "detail": "no independent compliance report (not on the OBO Dashboard)"
          }
        ],
        "notes": [
          "Clear license (R1.1): none found",
          "Release provenance (R1.2): no version in artefact, registry or release tags",
          "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)"
        ]
      },
      "quality": {
        "score": 0,
        "max": 20,
        "steps": [
          {
            "label": "Logical consistency",
            "pts": 0,
            "max": 10,
            "detail": "never checked by a reasoner"
          },
          {
            "label": "OWL 2 DL profile",
            "pts": 0,
            "max": 2,
            "detail": "profile not checked"
          },
          {
            "label": "Upper-ontology alignment",
            "pts": 0,
            "max": 3,
            "detail": "no BFO/COB/DOLCE import found"
          },
          {
            "label": "Standard relations (RO)",
            "pts": 0,
            "max": 1,
            "detail": "does not import the Relation Ontology"
          },
          {
            "label": "ROBOT report: no errors",
            "pts": 0,
            "max": 2,
            "detail": "no ROBOT report available"
          },
          {
            "label": "ROBOT report: warning density",
            "pts": 0,
            "max": 1,
            "detail": "no ROBOT report available"
          },
          {
            "label": "Pitfall scan: no critical pitfalls",
            "pts": 0,
            "max": 1,
            "detail": "no pitfall scan or ROBOT report yet"
          }
        ],
        "notes": [
          "Logical consistency: never checked by a reasoner",
          "OWL 2 DL profile: profile not checked",
          "Upper-ontology alignment: no BFO/COB/DOLCE import found",
          "Standard relations (RO): does not import the Relation Ontology",
          "ROBOT report: no errors: no ROBOT report available",
          "ROBOT report: warning density: no ROBOT report available",
          "Pitfall scan: no critical pitfalls: no pitfall scan or ROBOT report yet"
        ]
      },
      "maintenance": {
        "score": 0,
        "max": 16,
        "steps": [
          {
            "label": "Recency",
            "pts": 0,
            "max": 10,
            "detail": "no activity evidence"
          },
          {
            "label": "Release cadence (12 months)",
            "pts": 0,
            "max": 6,
            "detail": "0 releases"
          }
        ],
        "notes": [
          "Recency: no activity evidence",
          "Release cadence (12 months): 0 releases"
        ]
      },
      "adoption": {
        "score": 0,
        "max": 16,
        "steps": [
          {
            "label": "Documented adopting projects",
            "pts": 0,
            "max": 7,
            "detail": "0 projects"
          },
          {
            "label": "Reused by other ontologies",
            "pts": 0,
            "max": 4,
            "detail": "0"
          },
          {
            "label": "Community signal",
            "pts": 0,
            "max": 5,
            "detail": "max(stars 0 → 0, citations 0 → 0)"
          }
        ],
        "notes": [
          "Documented adopting projects: 0 projects",
          "Reused by other ontologies: 0",
          "Community signal: max(stars 0 → 0, citations 0 → 0)"
        ]
      }
    },
    "lastActivity": null,
    "adopterCount": 0,
    "reuseCount": 0,
    "importCount": 0,
    "registries": [
      "BioPortal",
      "OBO Foundry",
      "Bioregistry"
    ],
    "evaluatedVersion": null,
    "evaluatedAt": "2026-10-26T03:13:26.013Z",
    "runId": "2026-10-26T02-37-38Z",
    "adopters": []
  },
  "history": [
    {
      "runId": "2026-10-26T02-37-38Z",
      "at": "2026-10-26T03:31:18.947Z",
      "score": 7,
      "grade": "E",
      "fair": 22,
      "version": null,
      "terms": null,
      "stars": null,
      "license": null,
      "lastActivity": null,
      "adopters": 0,
      "links": {
        "homepage": "ok"
      },
      "archived": false,
      "rubric": "3.4",
      "snapshot": "https://schemascope.org/runs/2026-10-26T02-37-38Z.json"
    }
  ],
  "changes": [],
  "recordProvenance": {
    "source": "harvest",
    "retrievedAt": "2026-10-25T21:49:00Z",
    "registries": [
      {
        "registry": "Bioregistry",
        "key": "bioregistry",
        "id": "pao",
        "url": "https://bioregistry.io/api/registry/pao",
        "retrievedAt": "2026-10-25T21:49:00Z"
      },
      {
        "registry": "OBO Foundry",
        "key": "obo",
        "id": "pao",
        "url": "https://obofoundry.org/ontology/pao.html",
        "retrievedAt": "2026-10-25T21:49:00Z"
      },
      {
        "registry": "Bioregistry",
        "key": "bioregistry",
        "id": "bioportal.pae",
        "url": "https://bioregistry.io/api/registry/bioportal.pae",
        "retrievedAt": "2026-10-25T21:49:00Z"
      }
    ],
    "mergedIds": [
      "bioportal-pae"
    ],
    "fields": {
      "acronym": "Bioregistry",
      "name": "Bioregistry",
      "homepage": "Bioregistry",
      "obo": "Bioregistry",
      "description": "Bioregistry",
      "bioportal": "Bioregistry",
      "tags": "Bioregistry"
    }
  },
  "evaluationProvenance": {
    "@context": {
      "prov": "http://www.w3.org/ns/prov#",
      "schemascope": "https://schemascope.org/ns#"
    },
    "@id": "https://schemascope.org/o/pao/#evaluation",
    "@type": "prov:Entity",
    "prov:specializationOf": {
      "@id": "http://www.plantontology.org",
      "schemascope:evaluatedVersion": null
    },
    "prov:wasGeneratedBy": {
      "@id": "https://schemascope.org/runs/2026-10-26T02-37-38Z",
      "@type": "prov:Activity",
      "prov:startedAtTime": "2026-10-26T02:37:38.997Z",
      "prov:endedAtTime": "2026-10-26T03:31:18.947Z",
      "prov:wasAssociatedWith": {
        "@id": "https://schemascope.org/ns#evaluator",
        "@type": "prov:SoftwareAgent",
        "schemascope:version": "2.0.0"
      },
      "prov:used": [
        {
          "@id": "http://www.plantontology.org",
          "prov:atTime": "2026-10-26T03:13:26.012Z"
        },
        {
          "@id": "https://obofoundry.org/registry/ontologies.jsonld",
          "prov:atTime": "2026-10-26T02:37:39.556Z"
        },
        {
          "@id": "https://bioregistry.io/api/registry/pao",
          "prov:atTime": "2026-10-26T03:13:24.718Z"
        }
      ]
    },
    "prov:generatedAtTime": "2026-10-26T03:13:26.013Z"
  }
}