{
  "id": "togoid",
  "acronym": "TOGOID",
  "name": "TogoID Ontology",
  "category": "metadata",
  "kind": "ontology",
  "description": "TogoID is an ID conversion service implementing unique features with an intuitive web interface and an API for programmatic access. TogoID supports datasets from various biological categories such as gene, protein, chemical compound, pathway, disease, etc. TogoID users can perform exploratory multistep conversions to find a path among IDs. To guide the interpretation of biological meanings in the conversions, we crafted an ontology that defines the semantics of the dataset relations. (from https://togoid.dbcls.jp/)",
  "formats": [
    "OWL"
  ],
  "homepage": "https://togoid.dbcls.jp/ontology",
  "repository": "https://github.com/dbcls/togoid/togoid-config",
  "download": "https://raw.githubusercontent.com/togoid/togoid-config/main/ontology/togoid-ontology.ttl",
  "bioregistry": "togoid",
  "publications": [
    {
      "title": "TogoID: an exploratory ID converter to bridge biological datasets",
      "doi": "10.1093/bioinformatics/btac491",
      "year": 2022
    }
  ],
  "usedBy": [],
  "tags": [
    "ontology",
    "registry"
  ],
  "url": "https://schemascope.org/o/togoid/",
  "evaluation": {
    "links": {
      "homepage": {
        "url": "https://togoid.dbcls.jp/ontology",
        "code": 200,
        "state": "ok",
        "checkedAt": "2026-10-26T03:26:21.875Z"
      },
      "repository": {
        "url": "https://github.com/dbcls/togoid/togoid-config",
        "code": 404,
        "state": "dead",
        "checkedAt": "2026-10-26T03:26:17.344Z"
      },
      "download": {
        "url": "https://raw.githubusercontent.com/togoid/togoid-config/main/ontology/togoid-ontology.ttl",
        "code": 200,
        "state": "ok",
        "checkedAt": "2026-10-26T03:26:17.426Z"
      }
    },
    "github": {
      "slug": "dbcls/togoid",
      "stars": 2,
      "forks": 0,
      "openIssues": 0,
      "pushedAt": "2019-04-23T09:19:54Z",
      "archived": false,
      "license": null,
      "source": "https://api.github.com/repos/dbcls/togoid",
      "fetchedAt": "2026-10-26T03:26:17.823Z"
    },
    "ols": null,
    "obo": null,
    "bioportal": null,
    "citations": [
      {
        "doi": "10.1093/bioinformatics/btac491",
        "count": 17,
        "source": "https://api.crossref.org/works/10.1093%2Fbioinformatics%2Fbtac491",
        "fetchedAt": "2026-10-26T03:26:17.345Z"
      }
    ],
    "git": {
      "commit": "5b9eaae3f979d08e64abe4a8a19f7d2cc5b73dac",
      "ref": "master",
      "headTag": null,
      "latestTag": null,
      "tagCount": 0,
      "tagDates": [],
      "url": "https://github.com/dbcls/togoid/tree/5b9eaae3f979d08e64abe4a8a19f7d2cc5b73dac",
      "source": "https://github.com/dbcls/togoid.git/info/refs?service=git-upload-pack",
      "fetchedAt": "2026-10-26T03:26:17.361Z"
    },
    "tib": null,
    "dashboard": null,
    "quality": null,
    "oops": null,
    "releases": {
      "dates": [],
      "lastYear": 0,
      "from": null
    },
    "bioregistry": {
      "prefix": "togoid",
      "name": "TogoID Ontology",
      "mappings": {},
      "dependsOn": [],
      "appearsIn": [],
      "license": null,
      "version": null,
      "deprecated": false,
      "page": "https://bioregistry.io/togoid",
      "source": "https://bioregistry.io/api/registry/togoid",
      "fetchedAt": "2026-10-26T03:26:17.284Z"
    },
    "artifact": {
      "source": "https://raw.githubusercontent.com/togoid/togoid-config/main/ontology/togoid-ontology.ttl",
      "isRdf": true,
      "etag": "\"08b146f759fdd94b347d8afb53f2ff90fd4539d907ab86f6c27d1a715dddeb84\"",
      "contentType": "text/plain",
      "fetchedAt": "2026-10-26T03:26:17.452Z"
    },
    "score": 5,
    "gross": 25,
    "earned": 25,
    "possible": 100,
    "qualityApplies": true,
    "penalty": {
      "score": -20,
      "reason": "7.5 years → 4 × max(0, 7.5 − 1) (capped)",
      "steps": [
        {
          "label": "Time since last activity",
          "pts": -20,
          "detail": "7.5 years → 4 × max(0, 7.5 − 1) (capped)"
        },
        {
          "label": "Inactive status",
          "pts": 0,
          "detail": "not archived, legacy or inactive"
        },
        {
          "label": "Consistency",
          "pts": 0,
          "detail": "not yet checked by a reasoner"
        }
      ]
    },
    "consistent": null,
    "grade": "E",
    "fair": 24,
    "breakdown": {
      "findable": {
        "score": 4,
        "max": 12,
        "steps": [
          {
            "label": "Persistent identifier (F1)",
            "pts": 0,
            "max": 4,
            "detail": "no PURL / w3id / DOI for the artefact"
          },
          {
            "label": "Indexed in services (F4)",
            "pts": 1,
            "max": 5,
            "detail": "1: Bioregistry"
          },
          {
            "label": "Citable reference (F2)",
            "pts": 3,
            "max": 3,
            "detail": "doi:10.1093/bioinformatics/btac491"
          }
        ],
        "notes": [
          "Persistent identifier (F1): no PURL / w3id / DOI for the artefact",
          "Indexed in services (F4): 1: Bioregistry"
        ]
      },
      "accessible": {
        "score": 12,
        "max": 12,
        "steps": [
          {
            "label": "Homepage reachable",
            "pts": 3,
            "max": 3,
            "detail": "HTTP 200"
          },
          {
            "label": "Artefact retrievable over HTTP(S) (A1)",
            "pts": 6,
            "max": 6,
            "detail": "download HTTP 200"
          },
          {
            "label": "Metadata persists in a registry (A2)",
            "pts": 3,
            "max": 3,
            "detail": "Bioregistry"
          }
        ],
        "notes": []
      },
      "interoperable": {
        "score": 8,
        "max": 12,
        "steps": [
          {
            "label": "Formal machine-readable format (I1)",
            "pts": 5,
            "max": 5,
            "detail": "OWL"
          },
          {
            "label": "Semantic-web IRIs (I2)",
            "pts": 3,
            "max": 3,
            "detail": "OWL"
          },
          {
            "label": "References other vocabularies (I3)",
            "pts": 0,
            "max": 4,
            "detail": "no imported vocabularies found"
          }
        ],
        "notes": [
          "References other vocabularies (I3): no imported vocabularies found"
        ]
      },
      "reusable": {
        "score": 0,
        "max": 12,
        "steps": [
          {
            "label": "Clear license (R1.1)",
            "pts": 0,
            "max": 5,
            "detail": "none found"
          },
          {
            "label": "Release provenance (R1.2)",
            "pts": 0,
            "max": 4,
            "detail": "no version in artefact, registry or release tags"
          },
          {
            "label": "Community standards (R1.3)",
            "pts": 0,
            "max": 3,
            "detail": "no independent compliance report (not on the OBO Dashboard)"
          }
        ],
        "notes": [
          "Clear license (R1.1): none found",
          "Release provenance (R1.2): no version in artefact, registry or release tags",
          "Community standards (R1.3): no independent compliance report (not on the OBO Dashboard)"
        ]
      },
      "quality": {
        "score": 0,
        "max": 20,
        "steps": [
          {
            "label": "Logical consistency",
            "pts": 0,
            "max": 10,
            "detail": "never checked by a reasoner"
          },
          {
            "label": "OWL 2 DL profile",
            "pts": 0,
            "max": 2,
            "detail": "profile not checked"
          },
          {
            "label": "Upper-ontology alignment",
            "pts": 0,
            "max": 3,
            "detail": "no BFO/COB/DOLCE import found"
          },
          {
            "label": "Standard relations (RO)",
            "pts": 0,
            "max": 1,
            "detail": "does not import the Relation Ontology"
          },
          {
            "label": "ROBOT report: no errors",
            "pts": 0,
            "max": 2,
            "detail": "no ROBOT report available"
          },
          {
            "label": "ROBOT report: warning density",
            "pts": 0,
            "max": 1,
            "detail": "no ROBOT report available"
          },
          {
            "label": "Pitfall scan: no critical pitfalls",
            "pts": 0,
            "max": 1,
            "detail": "no pitfall scan or ROBOT report yet"
          }
        ],
        "notes": [
          "Logical consistency: never checked by a reasoner",
          "OWL 2 DL profile: profile not checked",
          "Upper-ontology alignment: no BFO/COB/DOLCE import found",
          "Standard relations (RO): does not import the Relation Ontology",
          "ROBOT report: no errors: no ROBOT report available",
          "ROBOT report: warning density: no ROBOT report available",
          "Pitfall scan: no critical pitfalls: no pitfall scan or ROBOT report yet"
        ]
      },
      "maintenance": {
        "score": 0,
        "max": 16,
        "steps": [
          {
            "label": "Recency",
            "pts": 0,
            "max": 10,
            "detail": "2019-04-23 → 90.1 months (older / unknown)"
          },
          {
            "label": "Release cadence (12 months)",
            "pts": 0,
            "max": 6,
            "detail": "0 releases"
          }
        ],
        "notes": [
          "Recency: 2019-04-23 → 90.1 months (older / unknown)",
          "Release cadence (12 months): 0 releases"
        ]
      },
      "adoption": {
        "score": 1,
        "max": 16,
        "steps": [
          {
            "label": "Documented adopting projects",
            "pts": 0,
            "max": 7,
            "detail": "0 projects"
          },
          {
            "label": "Reused by other ontologies",
            "pts": 0,
            "max": 4,
            "detail": "0"
          },
          {
            "label": "Community signal",
            "pts": 1,
            "max": 5,
            "detail": "max(stars 2 → 0, citations 17 → 1)"
          }
        ],
        "notes": [
          "Documented adopting projects: 0 projects",
          "Reused by other ontologies: 0",
          "Community signal: max(stars 2 → 0, citations 17 → 1)"
        ]
      }
    },
    "lastActivity": "2019-04-23T09:19:54.000Z",
    "adopterCount": 0,
    "reuseCount": 0,
    "importCount": 0,
    "registries": [
      "Bioregistry"
    ],
    "evaluatedVersion": {
      "label": "commit 5b9eaae",
      "from": "master at evaluation time",
      "value": "5b9eaae3f979d08e64abe4a8a19f7d2cc5b73dac",
      "all": [
        {
          "label": "commit 5b9eaae",
          "from": "master at evaluation time",
          "value": "5b9eaae3f979d08e64abe4a8a19f7d2cc5b73dac"
        }
      ]
    },
    "evaluatedAt": "2026-10-26T03:26:22.158Z",
    "runId": "2026-10-26T02-37-38Z",
    "adopters": []
  },
  "history": [
    {
      "runId": "2026-10-26T02-37-38Z",
      "at": "2026-10-26T03:31:18.947Z",
      "score": 5,
      "grade": "E",
      "fair": 24,
      "version": "commit 5b9eaae",
      "terms": null,
      "stars": 2,
      "license": null,
      "lastActivity": "2019-04-23T09:19:54.000Z",
      "adopters": 0,
      "links": {
        "homepage": "ok",
        "repository": "dead",
        "download": "ok"
      },
      "archived": false,
      "rubric": "3.4",
      "snapshot": "https://schemascope.org/runs/2026-10-26T02-37-38Z.json"
    }
  ],
  "changes": [],
  "recordProvenance": {
    "source": "harvest",
    "retrievedAt": "2026-10-25T21:49:00Z",
    "registries": [
      {
        "registry": "Bioregistry",
        "key": "bioregistry",
        "id": "togoid",
        "url": "https://bioregistry.io/api/registry/togoid",
        "retrievedAt": "2026-10-25T21:49:00Z"
      }
    ],
    "fields": {
      "acronym": "Bioregistry",
      "name": "Bioregistry",
      "description": "Bioregistry",
      "homepage": "Bioregistry",
      "repository": "Bioregistry",
      "download": "Bioregistry",
      "formats": "Bioregistry",
      "publications": "Bioregistry",
      "tags": "Bioregistry"
    }
  },
  "evaluationProvenance": {
    "@context": {
      "prov": "http://www.w3.org/ns/prov#",
      "schemascope": "https://schemascope.org/ns#"
    },
    "@id": "https://schemascope.org/o/togoid/#evaluation",
    "@type": "prov:Entity",
    "prov:specializationOf": {
      "@id": "https://raw.githubusercontent.com/togoid/togoid-config/main/ontology/togoid-ontology.ttl",
      "schemascope:evaluatedVersion": "5b9eaae3f979d08e64abe4a8a19f7d2cc5b73dac"
    },
    "prov:wasGeneratedBy": {
      "@id": "https://schemascope.org/runs/2026-10-26T02-37-38Z",
      "@type": "prov:Activity",
      "prov:startedAtTime": "2026-10-26T02:37:38.997Z",
      "prov:endedAtTime": "2026-10-26T03:31:18.947Z",
      "prov:wasAssociatedWith": {
        "@id": "https://schemascope.org/ns#evaluator",
        "@type": "prov:SoftwareAgent",
        "schemascope:version": "2.0.0"
      },
      "prov:used": [
        {
          "@id": "https://togoid.dbcls.jp/ontology",
          "prov:atTime": "2026-10-26T03:26:21.875Z"
        },
        {
          "@id": "https://github.com/dbcls/togoid/togoid-config",
          "prov:atTime": "2026-10-26T03:26:17.344Z"
        },
        {
          "@id": "https://raw.githubusercontent.com/togoid/togoid-config/main/ontology/togoid-ontology.ttl",
          "prov:atTime": "2026-10-26T03:26:17.426Z"
        },
        {
          "@id": "https://raw.githubusercontent.com/togoid/togoid-config/main/ontology/togoid-ontology.ttl",
          "prov:atTime": "2026-10-26T03:26:17.452Z"
        },
        {
          "@id": "https://github.com/dbcls/togoid.git/info/refs?service=git-upload-pack",
          "prov:atTime": "2026-10-26T03:26:17.361Z"
        },
        {
          "@id": "https://api.github.com/repos/dbcls/togoid",
          "prov:atTime": "2026-10-26T03:26:17.823Z"
        },
        {
          "@id": "https://bioregistry.io/api/registry/togoid",
          "prov:atTime": "2026-10-26T03:26:17.284Z"
        },
        {
          "@id": "https://api.crossref.org/works/10.1093%2Fbioinformatics%2Fbtac491",
          "prov:atTime": "2026-10-26T03:26:17.345Z"
        }
      ]
    },
    "prov:generatedAtTime": "2026-10-26T03:26:22.158Z"
  }
}