Ontology
ZFIN
Zebrafish Information Network Gene
ZFIN serves as the zebrafish model organism database. This collection references all zebrafish biological entities in ZFIN.
Source & access
Portals & registries
Also registered as
fairsharing: FAIRsharing.ybxnhg
Automated evaluation
F Findable FAIR10/12
- Persistent identifier (F1)w3id.org+4
- Indexed in services (F4)2: Bioregistry, FAIRsharing+3
- Citable reference (F2)doi:10.1093/nar/gky1090+3
A Accessible FAIR12/12
- Homepage reachableHTTP 200+3
- Artefact retrievable over HTTP(S) (A1)download HTTP 200+6
- Metadata persists in a registry (A2)Bioregistry+3
I Interoperable FAIR8/12
- Formal machine-readable format (I1)OWL, OBO+5
- Semantic-web IRIs (I2)OWL, OBO+3
- References other vocabularies (I3)no imported vocabularies found0
R Reusable FAIR5/12
- Clear license (R1.1)CC BY 4.0+5
- Release provenance (R1.2)no version in artefact, registry or release tags0
- Community standards (R1.3)no independent compliance report (not on the OBO Dashboard)0
Q Ontology consistency & quality0/20
- Logical consistencynever checked by a reasoner0
- OWL 2 DL profileprofile not checked0
- Upper-ontology alignmentno BFO/COB/DOLCE import found0
- Standard relations (RO)does not import the Relation Ontology0
- ROBOT report: no errorsno ROBOT report available0
- ROBOT report: warning densityno ROBOT report available0
- Pitfall scan: no critical pitfallsno pitfall scan or ROBOT report yet0
M Maintenance0/16
- Recencyno activity evidence0
- Release cadence (12 months)0 releases0
U Community adoption2/16
- Documented adopting projects0 projects0
- Reused by other ontologies00
- Community signalmax(stars 0 → 0, citations 231 → 2)+2
P Penalties (inactivity & inconsistency)-5
- No activity evidenceno commits, releases or dated files found-5
- Inactive statusnot archived, legacy or inactive0
- Consistencynot yet checked by a reasoner0
FAIR subtotal 35/48 · earned 37/100 − 5 inactivity = 32/100 → grade E
Community adoption 0
No adopting projects documented yet.
Know a project that uses ZFIN? Suggest it.
History & changes 1 run
History starts with the first archived run; changes appear after the next evaluation.
| Run | Score | FAIR | Version evaluated | Terms | Snapshot |
|---|---|---|---|---|---|
| 26 Oct 2026, 03:31 UTC | 32 E | 35 | — | — | JSON |
Provenance
Every fact on this page was fetched automatically. Each row shows where it came from and when. If a source fails, the last good value is kept and marked “carried forward”.
| Fact | Source | Retrieved |
|---|---|---|
| Homepage link check (HTTP 200) | zfin.org | 26 Oct 2026, 03:31 UTC |
| Download link check (HTTP 200) | w3id.org | 26 Oct 2026, 03:31 UTC |
| Artefact header | raw.githubusercontent.com | 26 Oct 2026, 03:31 UTC |
| Bioregistry mappings, dependencies & reuse | bioregistry.io | 26 Oct 2026, 03:31 UTC |
| Crossref citations (doi:10.1093/nar/gky1090) | api.crossref.org | 26 Oct 2026, 03:31 UTC |
| Crossref citations (doi:10.1093/nar/gks938) | api.crossref.org | 26 Oct 2026, 03:31 UTC |
Run 2026-10-26T02-37-38Z · evaluator v2.0.0 · rubric v3.4 · entry.json · run snapshot
How to cite
- The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources (2019) · doi:10.1093/nar/gky1090 · 143 citations
- ZFIN, the Zebrafish Model Organism Database: increased support for mutants and transgenics (2012) · doi:10.1093/nar/gks938 · 231 citations