Ontology

bigg.compartment

BiGG Compartment

BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments.

biggcellular componentcompartmentontologysubcellular compartment
E26

FAIR 31/48

Version 1.6.0

Evaluated 26 Oct 2026

How scores work

Source & access

Homepagebigg.ucsd.edu DownloadCanonical file / PURL

Automated evaluation

F Findable FAIR5/12
  • Persistent identifier (F1)w3id.org+4
  • Indexed in services (F4)1: Bioregistry+1
  • Citable reference (F2)no reference publication listed0
A Accessible FAIR12/12
  • Homepage reachableHTTP 200+3
  • Artefact retrievable over HTTP(S) (A1)download HTTP 200+6
  • Metadata persists in a registry (A2)Bioregistry+3
I Interoperable FAIR8/12
  • Formal machine-readable format (I1)OWL, OBO+5
  • Semantic-web IRIs (I2)OWL, OBO+3
  • References other vocabularies (I3)no imported vocabularies found0
R Reusable FAIR6/12
  • Clear license (R1.1)http://bigg.ucsd.edu/license#license (not a recognised open license)+2
  • Release provenance (R1.2)1.6.0 (version IRI in the artefact)+4
  • Community standards (R1.3)no independent compliance report (not on the OBO Dashboard)0
Q Ontology consistency & quality0/20
  • Logical consistencynever checked by a reasoner0
  • OWL 2 DL profileprofile not checked0
  • Upper-ontology alignmentno BFO/COB/DOLCE import found0
  • Standard relations (RO)does not import the Relation Ontology0
  • ROBOT report: no errorsno ROBOT report available0
  • ROBOT report: warning densityno ROBOT report available0
  • Pitfall scan: no critical pitfallsno pitfall scan or ROBOT report yet0
M Maintenance0/16
  • Recencyno activity evidence0
  • Release cadence (12 months)0 releases0
U Community adoption0/16
  • Documented adopting projects0 projects0
  • Reused by other ontologies00
  • Community signalmax(stars 0 → 0, citations 0 → 0)0
P Penalties (inactivity & inconsistency)-5
  • No activity evidenceno commits, releases or dated files found-5
  • Inactive statusnot archived, legacy or inactive0
  • Consistencynot yet checked by a reasoner0

FAIR subtotal 31/48 · earned 31/100 − 5 inactivity = 26/100 → grade E

Community adoption 0

No adopting projects documented yet.

Know a project that uses bigg.compartment? Suggest it.

History & changes 1 run

History starts with the first archived run; changes appear after the next evaluation.

RunScoreFAIRVersion evaluatedTermsSnapshot
26 Oct 2026, 03:31 UTC26 E311.6.0—JSON

Provenance

Every fact on this page was fetched automatically. Each row shows where it came from and when. If a source fails, the last good value is kept and marked “carried forward”.

FactSourceRetrieved
Homepage link check (HTTP 200)bigg.ucsd.edu26 Oct 2026, 02:40 UTC
Download link check (HTTP 200)w3id.org26 Oct 2026, 02:40 UTC
Artefact header (version IRI)raw.githubusercontent.com26 Oct 2026, 02:40 UTC
Bioregistry mappings, dependencies & reusebioregistry.io26 Oct 2026, 02:40 UTC

Run 2026-10-26T02-37-38Z · evaluator v2.0.0 · rubric v3.4 · entry.json · run snapshot