Ontology

CCF

Human Reference Atlas Common Coordinate Framework Ontology

The Common Coordinate Framework (CCF) Ontology is an application ontology built to support the development of the Human Reference Atlas (HRA). It unifies vocabulary for HRA construction and usage—making it possible to ingest external data sources; supporting uniform tissue sample registration that includes the spatial positioning and semantic annotations within 3D reference organs; and supporting user-formulated cross-domain queries over tissue donor properties, anatomical structures, cell types, biomarkers, and 3D space.

ontology
D44

FAIR 35/48

Version v2.3.0

Evaluated 26 Oct 2026

How scores work

Source & access

Homepagebioportal.bioontology.org Repositorygithub.com DownloadCanonical file / PURL Browse in OLSEMBL-EBI Ontology Lookup ServiceBrowse in BioPortalNCBO BioPortal

Portals & registries

SourceIDVersionClassesPropertiesIndividualsLoaded
OLS (EMBL-EBI)ccf—4194925 Oct 2026

Ontology IRI https://purl.humanatlas.io/vocab/ccf

Languages en

Imports from (5)
CL RO schema.org SO UBERON

Also registered as
aberowl: CCF bioportal: CCF ols: ccf

Automated evaluation

F Findable FAIR4/12
  • Persistent identifier (F1)no PURL / w3id / DOI for the artefact0
  • Indexed in services (F4)3: OLS, BioPortal, Bioregistry+4
  • Citable reference (F2)no reference publication listed0
A Accessible FAIR12/12
  • Homepage reachableHTTP 403+3
  • Artefact retrievable over HTTP(S) (A1)download HTTP 200+6
  • Metadata persists in a registry (A2)Bioregistry+3
I Interoperable FAIR12/12
  • Formal machine-readable format (I1)OWL+5
  • Semantic-web IRIs (I2)OWL+3
  • References other vocabularies (I3)imports 5: cl, ro, schemaorg_http, so, uberon+4
R Reusable FAIR7/12
  • Clear license (R1.1)CC BY 4.0+5
  • Release provenance (R1.2)v2.3.0 (latest GitHub release); not declared inside the artefact+2
  • Community standards (R1.3)no independent compliance report (not on the OBO Dashboard)0
Q Ontology consistency & quality1/20
  • Logical consistencynever checked by a reasoner0
  • OWL 2 DL profileprofile not checked0
  • Upper-ontology alignmentno BFO/COB/DOLCE import found0
  • Standard relations (RO)imports RO+1
  • ROBOT report: no errorsno ROBOT report available0
  • ROBOT report: warning densityno ROBOT report available0
  • Pitfall scan: no critical pitfallsno pitfall scan or ROBOT report yet0
M Maintenance8/16
  • Recency2026-05-19 → 5.2 months (≤ 6 months)+8
  • Release cadence (12 months)0 releases (GitHub releases)0
U Community adoption0/16
  • Documented adopting projects0 projects0
  • Reused by other ontologies00
  • Community signalmax(stars 3 → 0, citations 0 → 0)0
P Penalties (inactivity & inconsistency)0
  • Time since last activity0.4 years → 4 × max(0, 0.4 − 1)0
  • Inactive statusnot archived, legacy or inactive0
  • Consistencynot yet checked by a reasoner0

FAIR subtotal 35/48 · earned 44/100 = 44/100 → grade D

Community adoption 0

No adopting projects documented yet.

Know a project that uses CCF? Suggest it.

History & changes 1 run

History starts with the first archived run; changes appear after the next evaluation.

RunScoreFAIRVersion evaluatedTermsSnapshot
26 Oct 2026, 03:31 UTC44 D35v2.3.041JSON

Provenance

Every fact on this page was fetched automatically. Each row shows where it came from and when. If a source fails, the last good value is kept and marked “carried forward”.

FactSourceRetrieved
Homepage link check (HTTP 403)bioportal.bioontology.org26 Oct 2026, 02:41 UTC
Repository link check (HTTP 200)github.com26 Oct 2026, 02:41 UTC
Download link check (HTTP 200)aber-owl.net26 Oct 2026, 02:41 UTC
Artefact headeraber-owl.net26 Oct 2026, 02:41 UTC
Git refs (commit 4fd83e7, latest tag v2.3.0)github.com26 Oct 2026, 02:41 UTC
GitHub repository statisticsapi.github.com26 Oct 2026, 02:41 UTC
OLS classes, imports, version & releaseebi.ac.uk26 Oct 2026, 02:41 UTC
Bioregistry mappings, dependencies & reusebioregistry.io26 Oct 2026, 02:41 UTC

Run 2026-10-26T02-37-38Z · evaluator v2.0.0 · rubric v3.4 · entry.json · run snapshot