Ontology
pharmgkb.gene
PharmGKB Gene
The PharmGKB database is a central repository for genetic, genomic, molecular and cellular phenotype data and clinical information about people who have participated in pharmacogenomics research studies. The data includes, but is not limited to, clinical and basic pharmacokinetic and pharmacogenomic research in the cardiovascular, pulmonary, cancer, pathways, metabolic and transporter domains.
Source & access
- homepage pharmgkb.org HTTP 200
- download w3id.org HTTP 200
Portals & registries
Also registered as
bioportal: PHARMGKB
Automated evaluation
- Persistent identifier (F1)w3id.org+4
- Indexed in services (F4)2: BioPortal, Bioregistry+3
- Citable reference (F2)doi:10.2217/bmm.11.94+3
- Homepage reachableHTTP 200+3
- Artefact retrievable over HTTP(S) (A1)download HTTP 200+6
- Metadata persists in a registry (A2)Bioregistry+3
- Formal machine-readable format (I1)OWL, OBO+5
- Semantic-web IRIs (I2)OWL, OBO+3
- References other vocabularies (I3)no imported vocabularies found0
- Clear license (R1.1)CC BY-SA 4.0+5
- Release provenance (R1.2)no version in artefact, registry or release tags0
- Community standards (R1.3)no independent compliance report (not on the OBO Dashboard)0
- Logical consistencynever checked by a reasoner0
- OWL 2 DL profileprofile not checked0
- Upper-ontology alignmentno BFO/COB/DOLCE import found0
- Standard relations (RO)does not import the Relation Ontology0
- ROBOT report: no errorsno ROBOT report available0
- ROBOT report: warning densityno ROBOT report available0
- Pitfall scan: no critical pitfallsno pitfall scan or ROBOT report yet0
- Recencyno activity evidence0
- Release cadence (12 months)0 releases0
- Documented adopting projects0 projects0
- Reused by other ontologies00
- Community signalmax(stars 0 → 0, citations 132 → 2)+2
- No activity evidenceno commits, releases or dated files found-5
- Inactive statusnot archived, legacy or inactive0
- Consistencynot yet checked by a reasoner0
FAIR subtotal 35/48 · earned 37/100 − 5 inactivity = 32/100 → grade E
Community adoption 0
No adopting projects documented yet.
Know a project that uses pharmgkb.gene? Suggest it.
History & changes 1 run
History starts with the first archived run; changes appear after the next evaluation.
| Run | Score | FAIR | Version evaluated | Terms | Snapshot |
|---|---|---|---|---|---|
| 26 Oct 2026, 03:31 UTC | 32 E | 35 | — | — | JSON |
Provenance
Every fact on this page was fetched automatically. Each row shows where it came from and when. If a source fails, the last good value is kept and marked “carried forward”.
| Fact | Source | Retrieved |
|---|---|---|
| Homepage link check (HTTP 200) | pharmgkb.org | 26 Oct 2026, 03:14 UTC |
| Download link check (HTTP 200) | w3id.org | 26 Oct 2026, 03:14 UTC |
| Artefact header | raw.githubusercontent.com | 26 Oct 2026, 03:14 UTC |
| Bioregistry mappings, dependencies & reuse | bioregistry.io | 26 Oct 2026, 03:14 UTC |
| Crossref citations (doi:10.2217/bmm.11.94) | api.crossref.org | 26 Oct 2026, 03:14 UTC |
| Crossref citations (doi:10.1385/1-59259-957-5:179) | api.crossref.org | 26 Oct 2026, 03:14 UTC |
Run 2026-10-26T02-37-38Z · evaluator v2.0.0 · rubric v3.4 · entry.json · run snapshot
How to cite
- From pharmacogenomic knowledge acquisition to clinical applications: the PharmGKB as a clinical pharmacogenomic biomarker resource (2011) · doi:10.2217/bmm.11.94 · 132 citations
- PharmGKB: the pharmacogenetics and pharmacogenomics knowledge base (2005) · doi:10.1385/1-59259-957-5:179 · 18 citations