Ontology
RGD
Rat Genome Database
Rat Genome Database seeks to collect, consolidate, and integrate rat genomic and genetic data with curated functional and physiological data and make these data widely available to the scientific community. This collection references genes.
Source & access
- homepage rgd.mcw.edu HTTP 200
- download w3id.org HTTP 200
Portals & registries
Also registered as
fairsharing: FAIRsharing.pfg82t
Automated evaluation
F Findable FAIR10/12
- Persistent identifier (F1)w3id.org+4
- Indexed in services (F4)2: Bioregistry, FAIRsharing+3
- Citable reference (F2)doi:10.1093/database/baae132+3
A Accessible FAIR12/12
- Homepage reachableHTTP 200+3
- Artefact retrievable over HTTP(S) (A1)download HTTP 200+6
- Metadata persists in a registry (A2)Bioregistry+3
I Interoperable FAIR8/12
- Formal machine-readable format (I1)OWL, OBO+5
- Semantic-web IRIs (I2)OWL, OBO+3
- References other vocabularies (I3)no imported vocabularies found0
R Reusable FAIR5/12
- Clear license (R1.1)CC BY 4.0+5
- Release provenance (R1.2)no version in artefact, registry or release tags0
- Community standards (R1.3)no independent compliance report (not on the OBO Dashboard)0
Q Ontology consistency & quality0/20
- Logical consistencynever checked by a reasoner0
- OWL 2 DL profileprofile not checked0
- Upper-ontology alignmentno BFO/COB/DOLCE import found0
- Standard relations (RO)does not import the Relation Ontology0
- ROBOT report: no errorsno ROBOT report available0
- ROBOT report: warning densityno ROBOT report available0
- Pitfall scan: no critical pitfallsno pitfall scan or ROBOT report yet0
M Maintenance0/16
- Recencyno activity evidence0
- Release cadence (12 months)0 releases0
U Community adoption1/16
- Documented adopting projects0 projects0
- Reused by other ontologies00
- Community signalmax(stars 0 → 0, citations 12 → 1)+1
P Penalties (inactivity & inconsistency)-5
- No activity evidenceno commits, releases or dated files found-5
- Inactive statusnot archived, legacy or inactive0
- Consistencynot yet checked by a reasoner0
FAIR subtotal 35/48 · earned 36/100 − 5 inactivity = 31/100 → grade E
History & changes 1 run
History starts with the first archived run; changes appear after the next evaluation.
| Run | Score | FAIR | Version evaluated | Terms | Snapshot |
|---|---|---|---|---|---|
| 26 Oct 2026, 03:31 UTC | 31 E | 35 | — | — | JSON |
Provenance
Every fact on this page was fetched automatically. Each row shows where it came from and when. If a source fails, the last good value is kept and marked “carried forward”.
| Fact | Source | Retrieved |
|---|---|---|
| Homepage link check (HTTP 200) | rgd.mcw.edu | 26 Oct 2026, 03:19 UTC |
| Download link check (HTTP 200) | w3id.org | 26 Oct 2026, 03:19 UTC |
| Artefact header | raw.githubusercontent.com | 26 Oct 2026, 03:19 UTC |
| Bioregistry mappings, dependencies & reuse | bioregistry.io | 26 Oct 2026, 03:19 UTC |
| Crossref citations (doi:10.1093/database/baae132) | api.crossref.org | 26 Oct 2026, 03:19 UTC |
| Crossref citations (doi:10.1093/genetics/iyac005) | api.crossref.org | 26 Oct 2026, 03:19 UTC |
Run 2026-10-26T02-37-38Z · evaluator v2.0.0 · rubric v3.4 · entry.json · run snapshot
How to cite
- Standardized pipelines support and facilitate integration of diverse datasets at the Rat Genome Database () · doi:10.1093/database/baae132 · 2 citations
- MOET: a web-based gene set enrichment tool at the Rat Genome Database for multiontology and multispecies analyses (2022) · doi:10.1093/genetics/iyac005 · 12 citations