Ontology

OHMI

Ontology of Host-Microbiome Interactions

OHMI is a biomedical ontology that represents the entities and relations in the domain of host-microbiome interactions.

hostlife sciencemicrobiomeoboontology
B80

FAIR 47/48

Version 2026-05-14

Evaluated 26 Oct 2026

How scores work

Source & access

Homepagegithub.com DownloadCanonical file / PURL Browse in OLSEMBL-EBI Ontology Lookup ServiceBrowse in BioPortalNCBO BioPortalBrowse in OBO FoundryOBO Foundry registry

Portals & registries

SourceIDVersionClassesPropertiesIndividualsLoaded
OLS (EMBL-EBI)ohmi2026-05-141,7242773225 Oct 2026
OBO Dashboardohmi2026-05-141,379——14 May 2026

Ontology IRI http://purl.obolibrary.org/obo/ohmi.owl
Version IRI http://purl.obolibrary.org/obo/ohmi/releases/2026-05-14/ohmi.owl

Languages en en-us

Imports from (26)
BFO CHEBI CL CMO COB DOID DRON ENVO GO HP IAO IDO INO MONDO NCBITaxon OBI OGMS OMO PATO PCO PR RO SO UBERON UO UPHENO

Reused by (2)
OHD ONS

Logical consistency
consistent · 0 unsatisfiable
OWL 2 DL
no
ROBOT report
0 errors · 12 warnings · 191 info
OBO principles
FP01FP02FP03FP04FP05FP06FP07FP08FP09FP11FP12FP16FP20
Axioms
7,991 · 35.53% entities reused

Also registered as
aberowl: OHMI bioportal: OHMI fairsharing: FAIRsharing.cz9cnp obofoundry: ohmi ols: ohmi ontobee: OHMI wikidata.entity: Q113012673

Automated evaluation

F Findable FAIR12/12
  • Persistent identifier (F1)purl.obolibrary.org+4
  • Indexed in services (F4)5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing+5
  • Citable reference (F2)doi:10.1186/s13326-019-0217-1+3
A Accessible FAIR12/12
  • Homepage reachableHTTP 200+3
  • Artefact retrievable over HTTP(S) (A1)download HTTP 200+6
  • Metadata persists in a registry (A2)OBO Foundry, Bioregistry+3
I Interoperable FAIR12/12
  • Formal machine-readable format (I1)OWL+5
  • Semantic-web IRIs (I2)OWL+3
  • References other vocabularies (I3)imports 26: bfo, chebi, cl, cmo, cob, doid, dron, envo…+4
R Reusable FAIR11/12
  • Clear license (R1.1)CC BY 4.0+5
  • Release provenance (R1.2)2026-05-14 (version IRI in the artefact)+4
  • Community standards (R1.3)OBO principles: 10/13 checks pass+2
Q Ontology consistency & quality18/20
  • Logical consistencyconsistent, 0 unsatisfiable classes (OBO Dashboard)+10
  • OWL 2 DL profileoutside OWL 2 DL0
  • Upper-ontology alignmentimports BFO, COB+3
  • Standard relations (RO)imports RO+1
  • ROBOT report: no errors0 errors+2
  • ROBOT report: warning density12 warnings / 1379 classes = 0.01+1
  • Pitfall scan: no critical pitfallsno pitfall scan yet; ROBOT report has 0 errors+1
M Maintenance13/16
  • Recency2026-05-14 → 5.4 months (≤ 6 months)+8
  • Release cadence (12 months)4 releases (GitHub releases)+5
U Community adoption2/16
  • Documented adopting projects0 projects0
  • Reused by other ontologies2: ohd, ons+1
  • Community signalmax(stars 12 → 1, citations 11 → 1)+1
P Penalties (inactivity & inconsistency)0
  • Time since last activity0.5 years → 4 × max(0, 0.5 − 1)0
  • Inactive statusnot archived, legacy or inactive0
  • Consistencyconsistent, no unsatisfiable classes0

FAIR subtotal 47/48 · earned 80/100 = 80/100 → grade B

Community adoption 0

No adopting projects documented yet.

Know a project that uses OHMI? Suggest it.

History & changes 1 run

History starts with the first archived run; changes appear after the next evaluation.

RunScoreFAIRVersion evaluatedTermsSnapshot
26 Oct 2026, 03:31 UTC80 B472026-05-141,724JSON

Provenance

Every fact on this page was fetched automatically. Each row shows where it came from and when. If a source fails, the last good value is kept and marked “carried forward”.

FactSourceRetrieved
Homepage link check (HTTP 200)github.com26 Oct 2026, 03:10 UTC
Repository link check (HTTP 200)github.com26 Oct 2026, 03:10 UTC
Download link check (HTTP 200)purl.obolibrary.org26 Oct 2026, 03:10 UTC
Artefact header (version IRI)raw.githubusercontent.com26 Oct 2026, 03:10 UTC
Git refs (commit 96cf9d5, latest tag v2026-05-14)github.com26 Oct 2026, 03:10 UTC
GitHub repository statisticsapi.github.com26 Oct 2026, 03:10 UTC
OLS classes, imports, version & releaseebi.ac.uk26 Oct 2026, 03:10 UTC
OBO Foundry status, license & usagesobofoundry.org26 Oct 2026, 02:37 UTC
Bioregistry mappings, dependencies & reusebioregistry.io26 Oct 2026, 03:10 UTC
OBO Dashboard (checked 14 May 2026)dashboard.obofoundry.org26 Oct 2026, 02:37 UTC
Crossref citations (doi:10.1186/s13326-019-0217-1)api.crossref.org26 Oct 2026, 03:10 UTC

Run 2026-10-26T02-37-38Z · evaluator v2.0.0 · rubric v3.4 · entry.json · run snapshot

How to cite