Ontology
UPHENO
Unified Phenotype Ontology
The uPheno ontology integrates multiple phenotype ontologies into a unified cross-species phenotype ontology.
Source & access
- homepage github.com HTTP 200
- repository github.com HTTP 200
- download purl.obolibrary.org HTTP 200
Portals & registries
| Source | ID | Version | Classes | Properties | Individuals | Loaded |
|---|---|---|---|---|---|---|
| OLS (EMBL-EBI) | upheno | 2026-10-19 | 194,719 | 510 | 0 | 25 Oct 2026 |
| OBO Dashboard | upheno | 2025-10-12 | 63,050 | — | — | 11 Dec 2025 |
Ontology IRI http://purl.obolibrary.org/obo/upheno.owl
Version IRI http://purl.obolibrary.org/obo/upheno/releases/2026-10-19/upheno.owl
Languages en
Imports from (28)
APO BFO BSPO CHEBI CL DDPHENO DPO FBcv FYPO GO HP HsapDv IAO MP MPATH NBO OBA OMO PATO PHIPO PLANP PR RO SEMAPV UBERON WBPhenotype XPO ZP
Reused by (11)
GENO HTN OHMI RO CPONT DOID MFMO OBI ONTONEO PLANP PSO
- Logical consistency
- consistent · 0 unsatisfiable
- OWL 2 DL
- yes
- ROBOT report
- 31 errors · 2,723 warnings · 1,653 info
- OBO principles
- FP01FP02FP03FP04FP05FP06FP07FP08FP09FP11FP12FP16FP20
- Axioms
- 417,710 · 14.09% entities reused
Also registered as
aberowl: UPHENO bioportal: UPHENO fairsharing: FAIRsharing.r41qhx obofoundry: upheno ols: upheno ontobee: UPHENO wikidata.entity: Q81661827
Automated evaluation
- Persistent identifier (F1)purl.obolibrary.org+4
- Indexed in services (F4)5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing+5
- Citable reference (F2)doi:10.1093/genetics/iyaf027+3
- Homepage reachableHTTP 200+3
- Artefact retrievable over HTTP(S) (A1)download HTTP 200+6
- Metadata persists in a registry (A2)OBO Foundry, Bioregistry+3
- Formal machine-readable format (I1)OWL+5
- Semantic-web IRIs (I2)OWL+3
- References other vocabularies (I3)imports 28: apo, bfo, bspo, chebi, cl, ddpheno, dpo, fbcv…+4
- Clear license (R1.1)CC0 1.0+5
- Release provenance (R1.2)2026-10-19 (version IRI in the artefact)+4
- Community standards (R1.3)OBO principles: 9/13 checks pass+2
- Logical consistencyconsistent, 0 unsatisfiable classes (OBO Dashboard)+10
- OWL 2 DL profilein OWL 2 DL+2
- Upper-ontology alignmentimports BFO+3
- Standard relations (RO)imports RO+1
- ROBOT report: no errors31 errors0
- ROBOT report: warning density2723 warnings / 63050 classes = 0.04+1
- Pitfall scan: no critical pitfallsno pitfall scan yet; ROBOT report has 31 errors0
- Recency2026-10-20 → 0.2 months (≤ 3 months)+10
- Release cadence (12 months)2 releases (GitHub releases)+3
- Documented adopting projects1 project+2
- Reused by other ontologies11: geno, htn, ohmi, ro, cpont, doid…+3
- Community signalmax(stars 87 → 2, citations 14 → 1)+2
- Time since last activity0.0 years → 4 × max(0, 0.0 − 1)0
- Inactive statusnot archived, legacy or inactive0
- Consistencyconsistent, no unsatisfiable classes0
- ROBOT report errors31 errors-6
FAIR subtotal 47/48 · earned 84/100 − 6 inactivity = 78/100 → grade B
Community adoption 1
- monarchinitiative.org
uPheno is used by the Monarch Initiative for cross-species inference.
Source: OBO Foundry registry
Know a project that uses UPHENO? Suggest it.
History & changes 1 run
History starts with the first archived run; changes appear after the next evaluation.
| Run | Score | FAIR | Version evaluated | Terms | Snapshot |
|---|---|---|---|---|---|
| 26 Oct 2026, 03:31 UTC | 78 B | 47 | 2026-10-19 | 194,719 | JSON |
Provenance
Every fact on this page was fetched automatically. Each row shows where it came from and when. If a source fails, the last good value is kept and marked “carried forward”.
| Fact | Source | Retrieved |
|---|---|---|
| Homepage link check (HTTP 200) | github.com | 26 Oct 2026, 03:27 UTC |
| Repository link check (HTTP 200) | github.com | 26 Oct 2026, 03:27 UTC |
| Download link check (HTTP 200) | purl.obolibrary.org | 26 Oct 2026, 03:27 UTC |
| Artefact header (version IRI) | release-assets.githubusercontent.com | 26 Oct 2026, 03:27 UTC |
| Git refs (commit d77195f, latest tag v2026-10-19) | github.com | 26 Oct 2026, 03:27 UTC |
| GitHub repository statistics | api.github.com | 26 Oct 2026, 03:27 UTC |
| OLS classes, imports, version & release | ebi.ac.uk | 26 Oct 2026, 03:27 UTC |
| OBO Foundry status, license & usages | obofoundry.org | 26 Oct 2026, 02:37 UTC |
| Bioregistry mappings, dependencies & reuse | bioregistry.io | 26 Oct 2026, 03:27 UTC |
| OBO Dashboard (checked 11 Dec 2025) | dashboard.obofoundry.org | 26 Oct 2026, 02:37 UTC |
| Crossref citations (doi:10.1093/genetics/iyaf027) | api.crossref.org | 26 Oct 2026, 03:27 UTC |
| Crossref citations (doi:10.1101/2024.09.18.613276) | api.crossref.org | 26 Oct 2026, 03:27 UTC |
Run 2026-10-26T02-37-38Z · evaluator v2.0.0 · rubric v3.4 · entry.json · run snapshot
How to cite
- The Unified Phenotype Ontology : a framework for cross-species integrative phenomics (2025) · doi:10.1093/genetics/iyaf027 · 14 citations
- The Unified Phenotype Ontology (uPheno): A framework for cross-species integrative phenomics () · doi:10.1101/2024.09.18.613276 · 2 citations