Ontology

ORNASEQ

Ontology of RNA Sequencing

An application ontology designed to annotate next-generation sequencing experiments performed on RNA.

oboontologyrna-seq assaysingle cellsingle cell rna-seqtranscriptomics
D43

FAIR 44/48

Version 2019-07-08

Evaluated 26 Oct 2026

How scores work

Source & access

Homepagekim.bio.upenn.edu Repositorygithub.com DownloadCanonical file / PURL Browse in OLSEMBL-EBI Ontology Lookup ServiceBrowse in BioPortalNCBO BioPortalBrowse in OBO FoundryOBO Foundry registry

Portals & registries

SourceIDVersionClassesPropertiesIndividualsLoaded
OLS (EMBL-EBI)ornaseq2019-07-0816317125 Oct 2026
OBO Dashboardornaseq2019-07-08164——11 Dec 2025

Ontology IRI http://purl.obolibrary.org/obo/ornaseq.owl
Version IRI http://purl.obolibrary.org/obo/ornaseq/2019-07-08/ornaseq.owl

Languages en

Imports from (15)
BFO CHEBI CL EFO GENEPIO GO IAO NCBITaxon NCIT OBI OGMS RO SO TAXRANK UBERON

Logical consistency
consistent · 0 unsatisfiable
OWL 2 DL
no
ROBOT report
2 errors · 17 warnings · 0 info
OBO principles
FP01FP02FP03FP04FP05FP06FP07FP08FP09FP11FP12FP16FP20
Axioms
1,223 · 90.96% entities reused

Also registered as
aberowl: ORNASEQ bioportal: ORNASEQ fairsharing: FAIRsharing.e6f303 obofoundry: ornaseq ols: ornaseq ontobee: ORNASEQ wikidata.entity: Q81661765

Automated evaluation

F Findable FAIR9/12
  • Persistent identifier (F1)purl.obolibrary.org+4
  • Indexed in services (F4)5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing+5
  • Citable reference (F2)no reference publication listed0
A Accessible FAIR12/12
  • Homepage reachableHTTP 200+3
  • Artefact retrievable over HTTP(S) (A1)download HTTP 200+6
  • Metadata persists in a registry (A2)OBO Foundry, Bioregistry+3
I Interoperable FAIR12/12
  • Formal machine-readable format (I1)OWL, OBO+5
  • Semantic-web IRIs (I2)OWL, OBO+3
  • References other vocabularies (I3)imports 15: bfo, chebi, cl, efo, genepio, go, iao, ncbitaxon…+4
R Reusable FAIR11/12
  • Clear license (R1.1)CC BY 4.0+5
  • Release provenance (R1.2)2019-07-08 (version IRI in the artefact)+4
  • Community standards (R1.3)OBO principles: 7/13 checks pass+2
Q Ontology consistency & quality14/20
  • Logical consistencyconsistent, 0 unsatisfiable classes (OBO Dashboard)+10
  • OWL 2 DL profileoutside OWL 2 DL0
  • Upper-ontology alignmentimports BFO+3
  • Standard relations (RO)imports RO+1
  • ROBOT report: no errors2 errors0
  • ROBOT report: warning density17 warnings / 164 classes = 0.100
  • Pitfall scan: no critical pitfallsno pitfall scan yet; ROBOT report has 2 errors0
M Maintenance0/16
  • Recency2022-10-27 → 47.9 months (older / unknown)0
  • Release cadence (12 months)0 releases (GitHub releases)0
U Community adoption0/16
  • Documented adopting projects0 projects0
  • Reused by other ontologies00
  • Community signalmax(stars 3 → 0, citations 0 → 0)0
P Penalties (inactivity & inconsistency)-15
  • Time since last activity4.0 years → 4 × max(0, 4.0 − 1)-12
  • Inactive statusnot archived, legacy or inactive0
  • Consistencyconsistent, no unsatisfiable classes0
  • ROBOT report errors2 errors-3

FAIR subtotal 44/48 · earned 58/100 − 15 inactivity = 43/100 → grade D

Community adoption 0

No adopting projects documented yet.

Know a project that uses ORNASEQ? Suggest it.

History & changes 1 run

History starts with the first archived run; changes appear after the next evaluation.

RunScoreFAIRVersion evaluatedTermsSnapshot
26 Oct 2026, 03:31 UTC43 D442019-07-08163JSON

Provenance

Every fact on this page was fetched automatically. Each row shows where it came from and when. If a source fails, the last good value is kept and marked “carried forward”.

FactSourceRetrieved
Homepage link check (HTTP 200)kim.bio.upenn.edu26 Oct 2026, 03:12 UTC
Repository link check (HTTP 200)github.com26 Oct 2026, 03:12 UTC
Download link check (HTTP 200)purl.obolibrary.org26 Oct 2026, 03:12 UTC
Artefact header (version IRI)raw.githubusercontent.com26 Oct 2026, 03:12 UTC
Git refs (commit 1b28177, latest tag 2019-07-08)github.com26 Oct 2026, 03:12 UTC
GitHub repository statisticsapi.github.com26 Oct 2026, 03:12 UTC
OLS classes, imports, version & releaseebi.ac.uk26 Oct 2026, 03:12 UTC
OBO Foundry status, license & usagesobofoundry.org26 Oct 2026, 02:37 UTC
Bioregistry mappings, dependencies & reusebioregistry.io26 Oct 2026, 03:12 UTC
OBO Dashboard (checked 11 Dec 2025)dashboard.obofoundry.org26 Oct 2026, 02:37 UTC

Run 2026-10-26T02-37-38Z · evaluator v2.0.0 · rubric v3.4 · entry.json · run snapshot