Ontology

GENEPIO

Genomic Epidemiology Ontology

The Genomic Epidemiology Ontology (GenEpiO) covers vocabulary necessary to identify, document and research foodborne pathogens and associated outbreaks.

epidemiologyfoodgenomegenomicsoboontologypathogen
C66

FAIR 44/48

Version 2026-04-13

Evaluated 26 Oct 2026

How scores work

Source & access

Homepagegenepio.org Repositorygithub.com DownloadCanonical file / PURL Browse in OLSEMBL-EBI Ontology Lookup ServiceBrowse in BioPortalNCBO BioPortalBrowse in OBO FoundryOBO Foundry registry

Portals & registries

SourceIDVersionClassesPropertiesIndividualsLoaded
OLS (EMBL-EBI)genepio2026-04-139,15912896125 Oct 2026
OBO Dashboardgenepio2026-04-132,221——8 May 2026

Ontology IRI http://purl.obolibrary.org/obo/genepio.owl
Version IRI http://purl.obolibrary.org/obo/genepio/releases/2026-04-13/genepio.owl

Languages af bn da de en es fr hi hy it nb pt-br sq tr zh

Imports from (64)
AfPO APOLLO_SV BAO BFO BTO CHEBI CHMO CIDO CL CLO COB CVDO DOID ECTO EDAM EFO ENVO ExO FOODON GAZ GEOGEO GO GSSO HANCESTRO HP HSO IAO ICO IDO MI MMO MONDO MP MPATH NBO NCBITaxon NCIT NCRO OAE OBA OBI OBIB OGMS OMIT OMP OMRSE PATO PCO PECO PO PR RBO RO SIO SO STATO SYMP T4FS TRANS UBERON UO VO VT XCO

Reused by (7)
HSO NGBO ORNASEQ ADO EUPATH FOODON PRIDE

Logical consistency
consistent · 0 unsatisfiable
OWL 2 DL
no
ROBOT report
88 errors · 639 warnings · 18 info
OBO principles
FP01FP02FP03FP04FP05FP06FP07FP08FP09FP11FP12FP16FP20
Axioms
19,485 · 11.25% entities reused

Also registered as
aberowl: GENEPIO bioportal: GENEPIO fairsharing: FAIRsharing.y1mmbv obofoundry: genepio ols: genepio ontobee: GENEPIO wikidata.entity: Q55118402

Automated evaluation

F Findable FAIR9/12
  • Persistent identifier (F1)purl.obolibrary.org+4
  • Indexed in services (F4)5: OLS, BioPortal, OBO Foundry, Bioregistry, FAIRsharing+5
  • Citable reference (F2)no reference publication listed0
A Accessible FAIR12/12
  • Homepage reachableHTTP 200+3
  • Artefact retrievable over HTTP(S) (A1)download HTTP 200+6
  • Metadata persists in a registry (A2)OBO Foundry, Bioregistry+3
I Interoperable FAIR12/12
  • Formal machine-readable format (I1)OWL+5
  • Semantic-web IRIs (I2)OWL+3
  • References other vocabularies (I3)imports 64: afpo, apollo_sv, bao, bfo, bto, chebi, chmo, cido…+4
R Reusable FAIR11/12
  • Clear license (R1.1)CC BY 3.0+5
  • Release provenance (R1.2)2026-04-13 (version IRI in the artefact)+4
  • Community standards (R1.3)OBO principles: 8/13 checks pass+2
Q Ontology consistency & quality14/20
  • Logical consistencyconsistent, 0 unsatisfiable classes (OBO Dashboard)+10
  • OWL 2 DL profileoutside OWL 2 DL0
  • Upper-ontology alignmentimports BFO, COB+3
  • Standard relations (RO)imports RO+1
  • ROBOT report: no errors88 errors0
  • ROBOT report: warning density639 warnings / 2221 classes = 0.290
  • Pitfall scan: no critical pitfallsno pitfall scan yet; ROBOT report has 88 errors0
M Maintenance10/16
  • Recency2026-07-11 → 3.5 months (≤ 6 months)+8
  • Release cadence (12 months)1 release (GitHub releases)+2
U Community adoption4/16
  • Documented adopting projects0 projects0
  • Reused by other ontologies7: hso, ngbo, ornaseq, ado, eupath, foodon…+2
  • Community signalmax(stars 25 → 2, citations 0 → 0)+2
P Penalties (inactivity & inconsistency)-6
  • Time since last activity0.3 years → 4 × max(0, 0.3 − 1)0
  • Inactive statusnot archived, legacy or inactive0
  • Consistencyconsistent, no unsatisfiable classes0
  • ROBOT report errors88 errors-6

FAIR subtotal 44/48 · earned 72/100 − 6 inactivity = 66/100 → grade C

Community adoption 0

No adopting projects documented yet.

Know a project that uses GENEPIO? Suggest it.

History & changes 1 run

History starts with the first archived run; changes appear after the next evaluation.

RunScoreFAIRVersion evaluatedTermsSnapshot
26 Oct 2026, 03:31 UTC66 C442026-04-139,159JSON

Provenance

Every fact on this page was fetched automatically. Each row shows where it came from and when. If a source fails, the last good value is kept and marked “carried forward”.

FactSourceRetrieved
Homepage link check (HTTP 200)genepio.org26 Oct 2026, 02:57 UTC
Repository link check (HTTP 200)github.com26 Oct 2026, 02:57 UTC
Download link check (HTTP 200)purl.obolibrary.org26 Oct 2026, 02:57 UTC
Artefact header (version IRI)raw.githubusercontent.com26 Oct 2026, 02:57 UTC
Git refs (commit dcd17ec, latest tag v2021-05-24)github.com26 Oct 2026, 02:57 UTC
GitHub repository statisticsapi.github.com26 Oct 2026, 02:57 UTC
OLS classes, imports, version & releaseebi.ac.uk26 Oct 2026, 02:57 UTC
OBO Foundry status, license & usagesobofoundry.org26 Oct 2026, 02:37 UTC
Bioregistry mappings, dependencies & reusebioregistry.io26 Oct 2026, 02:57 UTC
OBO Dashboard (checked 8 May 2026)dashboard.obofoundry.org26 Oct 2026, 02:37 UTC

Run 2026-10-26T02-37-38Z · evaluator v2.0.0 · rubric v3.4 · entry.json · run snapshot