Ontology
OMP
Ontology of Microbial Phenotypes
An ontology of phenotypes covering microbes
Source & access
Homepagemicrobialphenotypes.org
Repositorygithub.com
DownloadCanonical file / PURL
Browse in OLSEMBL-EBI Ontology Lookup ServiceBrowse in BioPortalNCBO BioPortalBrowse in OBO FoundryOBO Foundry registry
- homepage microbialphenotypes.org HTTP 200
- repository github.com HTTP 200
- download purl.obolibrary.org HTTP 200
Portals & registries
| Source | ID | Version | Classes | Properties | Individuals | Loaded |
|---|---|---|---|---|---|---|
| OLS (EMBL-EBI) | omp | 2024-03-25 | 2,309 | 131 | 0 | 25 Oct 2026 |
| TIB Terminology Service | omp | 2024-03-25 | 2,309 | 131 | 0 | 28 Mar 2024 |
| OBO Dashboard | omp | 2024-03-25 | 2,309 | — | — | 11 Dec 2025 |
Ontology IRI http://purl.obolibrary.org/obo/omp.owl
Version IRI http://purl.obolibrary.org/obo/omp/releases/2024-03-25/omp.owl
Languages en
Imports from (5)
CHEBI GO IAO PATO RO
Reused by (4)
GENEPIO MCO ONS EUPATH
- Logical consistency
- consistent · 0 unsatisfiable
- OWL 2 DL
- yes
- ROBOT report
- 34 errors · 311 warnings · 12 info
- OBO principles
- FP01FP02FP03FP04FP05FP06FP07FP08FP09FP11FP12FP16FP20
- Axioms
- 21,698 · 12.53% entities reused
Also registered as
aberowl: OMP bioportal: OMP fairsharing: FAIRsharing.cc3f2x obofoundry: omp ols: omp ontobee: OMP tib.ts: omp wikidata.entity: Q81661753
Automated evaluation
F Findable FAIR12/12
- Persistent identifier (F1)purl.obolibrary.org+4
- Indexed in services (F4)6: OLS, TIB, BioPortal, OBO Foundry, Bioregistry, FAIRsharing+5
- Citable reference (F2)doi:10.1186/s12866-014-0294-3+3
A Accessible FAIR12/12
- Homepage reachableHTTP 200+3
- Artefact retrievable over HTTP(S) (A1)download HTTP 200+6
- Metadata persists in a registry (A2)OBO Foundry, Bioregistry+3
I Interoperable FAIR12/12
- Formal machine-readable format (I1)OWL, OBO+5
- Semantic-web IRIs (I2)OWL, OBO+3
- References other vocabularies (I3)imports 5: chebi, go, iao, pato, ro+4
R Reusable FAIR10/12
- Clear license (R1.1)CC BY 3.0+5
- Release provenance (R1.2)2024-03-25 (version IRI in the artefact)+4
- Community standards (R1.3)OBO principles: 6/13 checks pass+1
Q Ontology consistency & quality13/20
- Logical consistencyconsistent, 0 unsatisfiable classes (OBO Dashboard)+10
- OWL 2 DL profilein OWL 2 DL+2
- Upper-ontology alignmentno BFO/COB/DOLCE import found0
- Standard relations (RO)imports RO+1
- ROBOT report: no errors34 errors0
- ROBOT report: warning density311 warnings / 2309 classes = 0.130
- Pitfall scan: no critical pitfallsno pitfall scan yet; ROBOT report has 34 errors0
M Maintenance0/16
- Recency2024-03-25 → 31.0 months (older / unknown)0
- Release cadence (12 months)0 releases (dated git tags)0
U Community adoption3/16
- Documented adopting projects0 projects0
- Reused by other ontologies4: genepio, mco, ons, eupath+2
- Community signalmax(stars 8 → 1, citations 37 → 1)+1
P Penalties (inactivity & inconsistency)-12
- Time since last activity2.6 years → 4 × max(0, 2.6 − 1)-6
- Inactive statusnot archived, legacy or inactive0
- Consistencyconsistent, no unsatisfiable classes0
- ROBOT report errors34 errors-6
FAIR subtotal 46/48 · earned 62/100 − 12 inactivity = 50/100 → grade D
History & changes 1 run
History starts with the first archived run; changes appear after the next evaluation.
| Run | Score | FAIR | Version evaluated | Terms | Snapshot |
|---|---|---|---|---|---|
| 26 Oct 2026, 03:31 UTC | 50 D | 46 | 2024-03-25 | 2,309 | JSON |
Provenance
Every fact on this page was fetched automatically. Each row shows where it came from and when. If a source fails, the last good value is kept and marked “carried forward”.
| Fact | Source | Retrieved |
|---|---|---|
| Homepage link check (HTTP 200) | microbialphenotypes.org | 26 Oct 2026, 03:11 UTC |
| Repository link check (HTTP 200) | github.com | 26 Oct 2026, 03:11 UTC |
| Download link check (HTTP 200) | purl.obolibrary.org | 26 Oct 2026, 03:11 UTC |
| Artefact header (version IRI) | raw.githubusercontent.com | 26 Oct 2026, 03:11 UTC |
| Git refs (commit 04c460f, latest tag release_2024-03-25) | github.com | 26 Oct 2026, 03:11 UTC |
| GitHub repository statistics | api.github.com | 26 Oct 2026, 03:11 UTC |
| OLS classes, imports, version & release | ebi.ac.uk | 26 Oct 2026, 03:11 UTC |
| OBO Foundry status, license & usages | obofoundry.org | 26 Oct 2026, 02:37 UTC |
| TIB Terminology Service metrics | service.tib.eu | 26 Oct 2026, 03:11 UTC |
| Bioregistry mappings, dependencies & reuse | bioregistry.io | 26 Oct 2026, 03:11 UTC |
| OBO Dashboard (checked 11 Dec 2025) | dashboard.obofoundry.org | 26 Oct 2026, 02:37 UTC |
| Crossref citations (doi:10.1186/s12866-014-0294-3) | api.crossref.org | 26 Oct 2026, 03:11 UTC |
| Crossref citations (doi:10.1186/s13326-019-0205-5) | api.crossref.org | 26 Oct 2026, 03:11 UTC |
Run 2026-10-26T02-37-38Z · evaluator v2.0.0 · rubric v3.4 · entry.json · run snapshot
How to cite
- An ontology for microbial phenotypes (2014) · doi:10.1186/s12866-014-0294-3 · 37 citations
- Phenotype annotation with the ontology of microbial phenotypes (OMP) (2019) · doi:10.1186/s13326-019-0205-5 · 11 citations